SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21498

Length: 215 nt

UniGene Fasta

>biog3_v1.0_unigene21498
AATGTAGCTATGTCAGGTGGGGAGCTATTTGACCAGTTGCAGAAACAGGGGAGATATTCTGAGCCCGATGCCGCAAGATTGTTCAAGCATCTCATGGAAGTGGTGAAATATTGTCATGATAATGGGGTCGTGCACAGAGATCTGAAGCCAGAAAATATTCTGCTTGCAACAAAGTCTCCTTCGTCGCCGATCAAGCTTGCTGACTTTGGATTGGC

Ace file of the UniGene biog3_v1.0_unigene21498

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2486	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CDPK-like protein n=1 Tax=Solanum tuberosum RepID=Q8LPM2_SOLTU	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	calcium-dependent protein kinase	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	0.0	64%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV00

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 71 - 488

Fln protein: NVAMSGGELFDQLQKQGRYSEPDAARLFKHLMEVVKYCHDNGVVHRDLKPENILLATKSPSSPIKLADFGL

Protein Length: 72

Fln nts: AATGTAGCTATGTCAGGTGGGGAGCTATTTGACCAGTTGCAGAAACAGGGGAGATATTCTGAGCCCGATGCCGCAAGATTGTTCAAGCATCTCATGGAAGTGGTGAAATATTGTCATGATAATGGGGTCGTGCACAGAGATCTGAAGCCAGAAAATATTCTGCTTGCAACAAAGTCTCCTTCGTCGCCGATCAAGCTTGCTGACTTTGGATTGGC

Fln Alignment:

biogeco3_mira_c19767___SGGELFDQLQKQGRYSEPDAARLFKHLMEVVKYCHDNGVVHRDLKPENILLATKSPSSPIKLADFGL
A9NV00__________________SGGRLFDEMSGNGCYSENQAAKLIKELIMVIKYCHEMGVIHRDIKPENIL---RTSTGQLKLADFGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain