SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21493

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene21493
AATGTGATATGTGCATACATGGGGGAAAGGTTATTGTGGAGCCTTGGGGCATGGTGATGAGAATGATAAGACGGTTCCAGAATTTGTGGCCATTCTTAAGGAGCATCGGGCAGTGCAGGTTTGTGCCAGGAAGAGGAAGACCTTTGTTCTCTCTGATGATGGGTTGGTATTCGCTTTTGGATGGATGGCTTTTGGAAGCTTGGGATTTGTGAATAGAGGTATTTCGGACAAAGTT

Ace file of the UniGene biog3_v1.0_unigene21493

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene453	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	3.0e-18	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	regulator of chromosome condensation repeat-containing protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	Ran GTPase binding	GO:0008536	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 176 aas, your sequence is shorter than subject: 78 - 286

Fln protein: M*YVHTWGKGYCGALGHGDENDKTVPEFVAILKEHRAVQVCARKRKTFVLSDDGLVFAFGWMAFGSLGFVNRGISDKV

Protein Length: 79

Fln nts: AATGTGATATGTGCATACATGGGGGAAAGGTTATTGTGGAGCCTTGGGGCATGGTGATGAGAATGATAAGACGGTTCCAGAATTTGTGGCCATTCTTAAGGAGCATCGGGCAGTGCAGGTTTGTGCCAGGAAGAGGAAGACCTTTGTTCTCTCTGATGATGGGTTGGTATTCGCTTTTGGATGGATGGCTTTTGGAAGCTTGGGATTTGTGAATAGAGGTATTTCGGACAAAGTT

Fln Alignment:

biogeco3_mira_c19756___VHTWGKGYCGALGHGDENDKTVPEFVAILKEHRAVQVCARKRKTFVLSDDGL-VFAFGWMAFGSLGFVN
B8LNM4__________________VCSWGRGEDGQLGHGDAEDRPMPTFVSALDGCEITSVICGADHTTAYSDSRLVVYSWGWGDFGRLGHGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain