SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21474

Length: 397 nt

UniGene Fasta

>biog3_v1.0_unigene21474
TAAAGTCGCAAGAACTTGTCGAGATTTCATAAAAGAGCGTGTGGACCTTTTTGAGGGTATTCCTTCTAAACCAAAAGGTTATAAAAAAATGTAAGCACTTTAAATTGGTTGATCTGTCTCCATTTTGTTGGAGTGGCATAAAATTTTCCTGAAGTTGGTAGTCTTTTATTCCCAGAGTATGTAATTCCATGTTAAGGGACATTACAGCTTTCCCTTCGACTTTATTATGTTTTGTTTGATGAGCAGATGATACATCAATAGTCTGGCTCATTGTAATTAGACGCTTAGCTACTCCAATGATGTTGCTTCTGTTCTAAGACATGCATACCTCGATTAAGGTATCTAGTCACTTGTTTTTGCTTACACAAGTTGCAAGTCAGATTTCTATTGCAGCATA

Ace file of the UniGene biog3_v1.0_unigene21474

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8344	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0457 FOG: TPR repeat	-	-	6.0e-21	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	tetratricopeptide repeat-containing protein	-	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	photosystem I assembly	GO:0048564	Biological Process	84%
Blast2go	binding	GO:0005488	Molecular Function	84%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	84%
Blast2go	mitochondrion	GO:0005739	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQP2

Fln msg: your sequence is shorter than subject: 31 - 316

Fln protein: KVARTCRDFIKERVDLFEGIPSKPKGYKKM*

Protein Length: 32

Fln nts: TAAAGTCGCAAGAACTTGTCGAGATTTCATAAAAGAGCGTGTGGACCTTTTTGAGGGTATTCCTTCTAAACCAAAAGGTTATAAAAAAATGTAA___GCACTTTAAATTGGTTGATCTGTCTCCATTTTGTTGGAGTGGCATAAAATTTTCCTGAAGTTGGTAGTCTTTTATTCCCAGAGTATGTAATTCCATGTTAAGGGACATTACAGCTTTCCCTTCGACTTTATTATGTTTTGTTTGATGAGCAGATGATACATCAATAGTCTGGCTCATTGTAATTAGACGCTTAGCTACTCCAATGATGTTGCTTCTGTTCTAAGACATGCATACCTCGATTAAGGTATCTAGTCACTTGTTTTTGCTTACACAAGTTGCAAGTCAGATTTCTATTGCAGCATA

Fln Alignment:

biogeco3_mira_c19732___KVARTCRDFIKERVDLFEGIPSKPKGYKKM
C0PQP2__________________KVARSCRDLLKERVDLFEGIPAKPKGYKKM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain