SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21425

Length: 213 nt

UniGene Fasta

>biog3_v1.0_unigene21425
AATGTGTTTTGCTACTTGGGAATACATTCAGCAACAGGATTTCTTGGGGTTTACGTCCAAGATGGTTGAGCTCTTGTTTGAGGATATTTTCACTGTGACACGGATTGACCCAGATGGAAAGAAATTCGATAAAGTCTCTCGAATTGAAGCTCGCAGTGAGCAGTTTGACATGTACATGCTTCTAGATGTGAATATTGACGTATATCCTGTTTC

Ace file of the UniGene biog3_v1.0_unigene21425

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7811	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase n=1 Tax=Elaeis guineensis RepID=B3TLS5_ELAGV	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	dna-directed rna polymerases and iii kda polypeptide	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	84%
Blast2go	Pyrimidine metabolism	00240	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	84%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	84%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	84%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	84%
Blast2go	plastid	GO:0009536	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	RNA polymerase, Rpb8	IPR005570	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0G9

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 70 - 145

Fln protein: MCFATWEYIQQQDFLGFTSKMVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPV

Protein Length: 71

Fln nts: A_-_ATGTGTTTTGCTACTTGGGAATACATTCAGCAACAGGATTTCTTGGGGTTTACGTCCAAGATGGTTGAGCTCTTGTTTGAGGATATTTTCACTGTGACACGGATTGACCCAGATGGAAAGAAATTCGATAAAGTCTCTCGAATTGAAGCTCGCAGTGAGCAGTTTGACATGTACATGCTTCTAGATGTGAATATTGACGTATATCCTGTTTC

Fln Alignment:

biogeco3_mira_c19662___MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPV
A9P0G9__________________MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain