SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21366

Length: 335 nt

UniGene Fasta

>biog3_v1.0_unigene21366
AATGTCGTTATATACCATGTCGAAACATATGATGTGACAACTATCAGAGCGAGCACGCCCATGTTCTTGATGTCTCGGAAAATCAAGTCCTTGGGAGTAAAAATGGTTCTCTCTGGAGAAGGATCAGATGAGATATTTGGTGGCTATTTGTACTTCCACAAGGCTCCTAACAAAGAGGAATTCCACCAGGAAACCTGTCGTAAGATAAAGGCCCTTCACATGTATGACTGCTTGAGGGCGAACAAGTCGACATCTGCATGGGGTTTGGAGGCCCGTGTACCATTTCTAGATAAGGAATTTGTCAACGTTGCCATGGACATTGATCCCTATTGGAA

Ace file of the UniGene biog3_v1.0_unigene21366

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene59982	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Asparagine synthetase n=3 Tax=Pinaceae RepID=E7EAQ2_PINPS	-	-	85%
FL-Next	tr=Asparagine synthetase; Pinus pinaster (Maritime pine).	-	-	98%
Blast2go	asparagine synthetase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate--ammonia ligase.	EC:6.3.1.1	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	83%
Blast2go	Cyanoamino acid metabolism	00460	83%
Blast2go	Nitrogen metabolism	00910	83%
Blast2go	Metabolic pathways	01100	83%
Blast2go	Biosynthesis of secondary metabolites	01110	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	asparagine biosynthetic process	GO:0006529	Biological Process	0.0	83%
Blast2go	aspartate-ammonia ligase activity	GO:0004071	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E7EAQ2

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 111 - 593

Fln protein: NVVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGLEARVPFLDKEFVNVAMDIDPYW

Protein Length: 112

Fln nts: AATGTCGTTATATACCATGTCGAAACATATGATGTGACAACTATCAGAGCGAGCACGCCCATGTTCTTGATGTCTCGGAAAATCAAGTCCTTGGGAGTAAAAATGGTTCTCTCTGGAGAAGGATCAGATGAGATATTTGGTGGCTATTTGTACTTCCACAAGGCTCCTAACAAAGAGGAATTCCACCAGGAAACCTGTCGTAAGATAAAGGCCCTTCACATGTATGACTGCTTGAGGGCGAACAAGTCGACATCTGCATGGGGTTTGGAGGCCCGTGTACCATTTCTAGATAAGGAATTTGTCAACGTTGCCATGGACATTGATCCCTATTGGAA

Fln Alignment:

biogeco3_mira_c19575___VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGLEARVPFLDKEFVNVAMDIDPYW
E7EAQ2__________________VIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFVNVAMDIDPEW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain