SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21277

Length: 278 nt

UniGene Fasta

>biog3_v1.0_unigene21277
CATTTGATGGGTCCTCTGCCCCTTGCGGCCACGCCGAACACTAAAATTTCCAGGTGGGTTCCTTCCTTGTCTTTGATATTAGAATGGGTGTGTCTTGTTTTTGATGAACACTATTCCAGTCTGGTTCTGTTCTCTGAATTTCATGATGAGTTGAAGTCCATAGAAAAAATGGTCAAGCGCTATTCTAAAGCAACGGAAGAGTGGTGTTCTTTGGCTAGTGTAGTGGAGCTTCTTAAGTCAGAAGCTCGGCTTCCCAACATCAGCAAGTTTGATGCTAA

Ace file of the UniGene biog3_v1.0_unigene21277

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10122	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] gb\|AAF27096.1\|AC011809_5 Unknown protein [Arabidopsis thaliana] gb\|AAL07061.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20279.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29771.1\| uncharacterized prote	-	-	2.99878e-43	31%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	41%
Blast2go	uncharacterized protein	-	-	0.0	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7KH77

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 92 - 399

Fln protein: HLMGPLPLAATPNTKISRWVPSLSLILEWVCLVFDEHYSSLVLFSEFHDELKSIEKMVKRYSKATEEWCSLASVVELLKSEARLPNISKFDA

Protein Length: 93

Fln nts: CATTTGATGGGTCCTCTGCCCCTTGCGGCCACGCCGAACACTAAAATTTCCAGGTGGGTTCCTTCCTTGTCTTTGATATTAGAATGGGTGTGTCTTGTTTTTGATGAACACTATTCCAGTCTGGTTCTGTTCTCTGAATTTCATGATGAGTTGAAGTCCATAGAAAAAATGGTCAAGCGCTATTCTAAAGCAACGGAAGAGTGGTGTTCTTTGGCTAGTGTAGTGGAGCTTCTTAAGTCAGAAGCTCGGCTTCCCAACATCAGCAAGTTTGATGCTAA

Fln Alignment:

biogeco3_mira_c19440___GPLPLAATP-NTKISRWVPSLSLILEWVCLVFDEHYSSLVLFSEFHDELKSIEKMVKRYSKATEEWCSLASVVELLK
D7KH77__________________GPCPKAASKLGLKLCNWVPELADITKCLGLIIDENFSTLVLYSDLHEELKSIARVADGLASESKLCCFVANVVESLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain