SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21225

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21225
AATGTATATGCTATTAATTTAGCTATTGTTACGTCATGTTTCTGTGGAGCACAAGAACTTGCAAGGGAACTACGTGCTGCAGAACCTGGGGATCCCATAAACTCTGCGCTAGGTGGCATTGCCAGTGGTGGTTTTCTCGGTCGCATTCAAGGTGGCAGGCCTAGAGCCTTTCAATATGCCTTCATGTTTGCATTAGTTGGCACAGGGCTGCAATTTGGTGCAAATAAATTTCAAGAATATCGATCACAGCCGTATTTAGAATCTACAACCACAGATGCATTGAGCGAGGATGAAAAACCAATTGAAAAGAAATGGTGGTCTTGGCCAGAGTGGGCACCCATCCAAAAGCTAGATGAGGAAGCGGCAGCAAAGCGAGCTCAGGAAAGAGATCTCCATATTCAAAGGACCATAGATAAACTGAAGAAAGGAGAATCCTCGTAGATGGACATT

Ace file of the UniGene biog3_v1.0_unigene21225 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene656	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] dbj\|BAB02070.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABD64061.1\| At3g25120 [Arabidopsis thaliana] gb\|ACI31307.1\| At2g45250 [Arabid	-	-	6.0e-16	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein	-	-	0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	59%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	59%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	59%
Blast2go	integral to membrane	GO:0016021	Cellular Component	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24	IPR003397	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNB0

Fln msg: your sequence is shorter than subject: 147 - 208

Fln protein: NVYAINLAIVTSCFCGAQELARELRAAEPGDPINSALGGIASGGFLGRIQGGRPRAFQYAFMFALVGTGLQFGANKFQEYRSQPYLESTTTDALSEDEKPIEKKWWSWPEWAPIQKLDEEAAAKRAQERDLHIQRTIDKLKKGESS*

Protein Length: 148

Fln nts: AATGTATATGCTATTAATTTAGCTATTGTTACGTCATGTTTCTGTGGAGCACAAGAACTTGCAAGGGAACTACGTGCTGCAGAACCTGGGGATCCCATAAACTCTGCGCTAGGTGGCATTGCCAGTGGTGGTTTTCTCGGTCGCATTCAAGGTGGCAGGCCTAGAGCCTTTCAATATGCCTTCATGTTTGCATTAGTTGGCACAGGGCTGCAATTTGGTGCAAATAAATTTCAAGAATATCGATCACAGCCGTATTTAGAATCTACAACCACAGATGCATTGAGCGAGGATGAAAAACCAATTGAAAAGAAATGGTGGTCTTGGCCAGAGTGGGCACCCATCCAAAAGCTAGATGAGGAAGCGGCAGCAAAGCGAGCTCAGGAAAGAGATCTCCATATTCAAAGGACCATAGATAAACTGAAGAAAGGAGAATCCTCGTAG___ATGGACATT

Fln Alignment:

biogeco3_mira_c19366___NVYAINLAIVTSCFCGAQXXXXXXXXXEPGDPINSALGGIASGGFLGRIQGGRPRAFQYAFMFALVGTGLQFGANKFQEYRSQPYLESTTTDALSEDEKPIEKKWWSWPEWAPIQKLDEEAAAKRAQERDLHIQRTIDKLKKGESS
A9NNB0__________________SAYAINLAIVTSCFCGAQELVRELRAAEPGDPINSVLGGIASGGFLGRIQGGRPRAFQYAFMFALVGTGLQYGAHKFQEYRSQQYLESSSTDTLGEAEKPSEKKWWSWPEWAPIQKLDEEAAAKRAQERDLHIQRTIDKLKKGESS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain