SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21211

Length: 322 nt

UniGene Fasta

>biog3_v1.0_unigene21211
AATGTCTTCTCCTTCCGAATTGCATCGAATTTGCCTTTGTGTTCATGGGGGCCTCTGTCCGGGGCGCCATTGTGACCACGGCCAATCCTTCTACAAGCCGGGCGAGATCGCCAAACAGGCCAAGGCCGCGGGCGCGCGCATCATAGTTACCCTGGCGGCTTATGTTGAGAAACTGGCCGATCTGCAGAGCCACGATGTGCTCATCATCACAATCGATGATGCTCCCAAGGAAGGTTGCCAACATATTTCCGTTCTTACCGAAGCCGACGAAACCCAATGCCCGGCCGTGAAAATCCACCCGGACGATGTCGTGGCGTTGCCC

Ace file of the UniGene biog3_v1.0_unigene21211

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8287	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	4-coumarate--CoA ligase n=18 Tax=Pinaceae RepID=4CL_PINTA	-	-	92%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	100%
Blast2go	4-coumarate: ligase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing).	EC:1.13.12.7	-	0.0	87%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	87%
Blast2go	Phenylalanine metabolism	00360	87%
Blast2go	Phenylpropanoid biosynthesis	00940	87%
Blast2go	Biosynthesis of phenylpropanoids	01061	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	phenylpropanoid metabolic process	GO:0009698	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity	GO:0047077	Molecular Function	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg: Overlapping hits, possible frame ERROR between 89 and 89, Distance to subject end: 350 aas, your sequence is shorter than subject: 107 - 537

Fln protein: CLLLPNCIEFAFVFMGASVRGAIVTTANxxYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLIITIDDAPKEGCQHISVLTEADETQCPAVKIHPDDVVALP

Protein Length: 108

Fln nts: AATGTCTTCTCCTTCCGAATTGCATCGAATTTGCCTTTGTGTTCATGGGGGCCTCTGTCCGGGGCGCCATTGTGACCACGGCCAATxxxxxxTACAAGCCGGGCGAGATCGCCAAACAGGCCAAGGCCGCGGGCGCGCGCATCATAGTTACCCTGGCGGCTTATGTTGAGAAACTGGCCGATCTGCAGAGCCACGATGTGCTCATCATCACAATCGATGATGCTCCCAAGGAAGGTTGCCAACATATTTCCGTTCTTACCGAAGCCGACGAAACCCAATGCCCGGCCGTGAAAATCCACCCGGACGATGTCGTGGCGTTGCCC

Fln Alignment:

biogeco3_mira_c19347___LLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLIITIDDAPKEGCQHISVLTEADETQCPAVKIHPDDVVALP
C1KBY2__________________LLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEADETQCPAVKIHPDDVVALP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain