SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21162

Length: 472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene21162
AATGTCAAGGAATGTTTCATTTCTTAGAAAAGATGTCGTGGCTCCCTATGTCCATGTTGTAGATACATATGTCAATGATGATTCTTCAGATCCATTTGAGTCACGAACAACACTACTTTACTTTCGAGGAAGGATTAAGCGAAAGGATGAAGGATTTGTGCGTTTGCAACTAGCAAAGACTTTGGGCAATGATAAAGAGTCCATTTTGAAGACAGTCTAGCAACAACTGAAGGTTTTGAAGCGGCCAAGCAAGGTATGCGCTCATCACGGTTTTGTTACACCCTGCTGGTGACACCCCTTCTTCGTGTCGCTTGTTTGACGCCATTGTAAGCCACTGTGTTCCTGTTATTGTGAGTGATCGGATTGAACTACCATTTGAAGATGAAATTGATTACCAAGAGTTCTCACTATTCTTTTCAGTGAACGAAGCAGTGTGGCCTGGATATTTGATGCAAAAGCTAGAGACATTTCC

Ace file of the UniGene biog3_v1.0_unigene21162 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2649	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	exostosin-like protein [Arabidopsis thaliana] gb\|ABI93883.1\| At1g67410 [Arabidopsis thaliana] gb\|AEE34641.1\| exostosin-like protein [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	arabinosyltransferase-like protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	82%
Blast2go	endomembrane system	GO:0012505	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV69

Fln msg: Overlapping hits, possible frame ERROR between 337 and 276, Distance to subject end: 63 aas, your sequence is shorter than subject: 157 - 446

Fln protein: MSRNVSFLRKDVVAPYVHVVDTYVNDDSSDPFESRTTLLYFRGRIKRKDEGFVRLQLAKTLGNDKESILKTV*QQLKVLKRPSKVCAHHGFxxxxxxxxxxxxxxxxxxxxxxVPVIVSDRIELPFEDEIDYQEFSLFFSVNEAVWPGYLMQKLETF

Protein Length: 158

Fln nts: AATGTCAAGGAATGTTTCATTTCTTAGAAAAGATGTCGTGGCTCCCTATGTCCATGTTGTAGATACATATGTCAATGATGATTCTTCAGATCCATTTGAGTCACGAACAACACTACTTTACTTTCGAGGAAGGATTAAGCGAAAGGATGAAGGATTTGTGCGTTTGCAACTAGCAAAGACTTTGGGCAATGATAAAGAGTCCATTTTGAAGACAGTCTAGCAACAACTGAAGGTTTTGAAGCGGCCAAGCAAGGTATGCGCTCATCACGGTTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTTCCTGTTATTGTGAGTGATCGGATTGAACTACCATTTGAAGATGAAATTGATTACCAAGAGTTCTCACTATTCTTTTCAGTGAACGAAGCAGTGTGGCCTGGATATTTGATGCAAAAGCTAGAGACATTTCC

Fln Alignment:

biogeco3_mira_c19272___RNVSFLRKDVVAPYVHVVDTYVNDDSSDPFESRTTLLYFRGRIKRKDEGFVRLQLAKTLGNDK----ESILKTV*QQLKVLK---RPSKVCAHxxxxxxxxxxxxxxxxxxxxxxxxIVSDRIELPFEDEIDYQEFSLFFSVNEAVWPGYLMQKLETF
A9NV69__________________RSVSFLRKDVVAPYVHVVDTYVNDDSSDPFESRTMLLYFRGRTKRKDEGFVRLKLAKILGNHKRVHFEDSLATT-EGFEVAKQGMRSSRFCLHxxxxxxxxxxxxxxxxxxxxxxxxIVSDRIELPFEDEIDYQEFSLFFSVKEALRPGYLMQKLETF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain