SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21091

Length: 404 nt

UniGene Fasta

>biog3_v1.0_unigene21091
AATGTTTTTGTCTGAAAACAGAATAGTGACTCTTCCCAGGTCAATTGAGGGGCTTTCCAAGTTAAAGAAACTGGATATTCATGCAAATCAGCTGATGAATCTTCCAGATTCCATTGGTGAGTTGTCCAATCTAACTGATCTAGACTTGCATGGCAATCGCTTACAAACTTTGCCTGATTCAGTTGGAATGCTTTCTCGGCTTGTATCCTTGGACTTGAGTTCAAATAAGCTTTTGTCACTGCCCGAGTCTGTTGGGCAGCTTAGCAATTTGAAAAGACTGAATATTGAGACCAATGAAATTGAAGAGTTACCATATACAATTGGTCAGTGTGTTGCTCTTACTGAGCTTCGAGCAGATTACAATAAACTCAAAGCTCTGCCTGAAGCTGTTGGCAAGCTACATT

Ace file of the UniGene biog3_v1.0_unigene21091

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7839	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	plant intracellular ras group-related LRR 4 [Arabidopsis thaliana] emb\|CAB54875.1\| putative protein [Arabidopsis thaliana] emb\|CAB80263.1\| putative protein [Arabidopsis thaliana] gb\|AAL61931.1\| putative protein [Arabidopsis thaliana] gb\|AAM91130.1\| putati	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQU6

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 134 - 524

Fln protein: MFLSENRIVTLPRSIEGLSKLKKLDIHANQLMNLPDSIGELSNLTDLDLHGNRLQTLPDSVGMLSRLVSLDLSSNKLLSLPESVGQLSNLKRLNIETNEIEELPYTIGQCVALTELRADYNKLKALPEAVGKLH

Protein Length: 135

Fln nts: AATGTTTTTGTCTGAAAACAGAATAGTGACTCTTCCCAGGTCAATTGAGGGGCTTTCCAAGTTAAAGAAACTGGATATTCATGCAAATCAGCTGATGAATCTTCCAGATTCCATTGGTGAGTTGTCCAATCTAACTGATCTAGACTTGCATGGCAATCGCTTACAAACTTTGCCTGATTCAGTTGGAATGCTTTCTCGGCTTGTATCCTTGGACTTGAGTTCAAATAAGCTTTTGTCACTGCCCGAGTCTGTTGGGCAGCTTAGCAATTTGAAAAGACTGAATATTGAGACCAATGAAATTGAAGAGTTACCATATACAATTGGTCAGTGTGTTGCTCTTACTGAGCTTCGAGCAGATTACAATAAACTCAAAGCTCTGCCTGAAGCTGTTGGCAAGCTACATT

Fln Alignment:

biogeco3_mira_c19169___LSENRIVTLPRSIEGLSKLKKLDIHANQLMNLPDSIGELSNLTDLDLHGNRLQTLPDSVGMLSRXXXXXXXXXXXXXXPESVG-QLSNLKRLNIETNEIEELPYTIGQCVALTELRADYNKLKALPEAVGKL
B8LQU6__________________LSRNKIQAVTDSIAGLVNLETLDLSGNVLVSLPDSIGLLKRLKFLNISGNKLKSLPDSISMCSELIELDASYNQLTYLPTNFGYQLANLQKLLVQLNKLRSLPSSVCELKSLRYLDVHFNELRSLPEALGDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain