SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21084

Length: 319 nt

UniGene Fasta

>biog3_v1.0_unigene21084
AATGTGGATTGCTTTCTTGTGTCTGAAAAAGCTGAATGTATCAAATTGGAACGCAATCCTGTCTTCAATCGAAGTATTGAAGAATGTGTGGAGCTGTTGGAACTTATGGGAATGCCAGTTTTAAGAGCAAAGGGTGAGGCTGAAGCACTTTGTGCACAGATAAATAGAGAAGGCTGGGTGGATGCTTGTATTACAGTTGATAGTGATGCATTTCTTCATGGAGCTAAATGCATAATAAAGTGTCTCCAAGCAGATTGTAAAGAGCCCATTATAGAATGCTATAGGGCATCTGATATTGATATGATTCTTGGTTTGAAGA

Ace file of the UniGene biog3_v1.0_unigene21084

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1635	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO	-	-	51%
FL-Next	sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice).	-	-	63%
Blast2go	5 -3 exonuclease-like protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	64%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	64%
Blast2go	flap endonuclease activity	GO:0048256	Molecular Function	64%
Blast2go	double-stranded DNA binding	GO:0003690	Molecular Function	64%
Blast2go	nucleus	GO:0005634	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	DNA repair protein (XPGC)/yeast Rad	IPR006084	-	-
Sma3	XPG N-terminal	IPR006085	-	-
Sma3	XPG/RAD2 endonuclease	IPR006086	-	-
Sma3	Helix-hairpin-helix motif, class 2	IPR008918	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q64MA3

Fln msg: Distance to subject end: 422 aas, your sequence is shorter than subject: 106 - 629

Fln protein: NVDCFLVSEKAECIKLERNPVFNRSIEECVELLELMGMPVLRAKGEAEALCAQINREGWVDACITVDSDAFLHGAKCIIKCLQADCKEPIIECYRASDIDMILGLK

Protein Length: 107

Fln nts: AATGTGGATTGCTTTCTTGTGTCTGAAAAAGCTGAATGTATCAAATTGGAACGCAATCCTGTCTTCAATCGAAGTATTGAAGAATGTGTGGAGCTGTTGGAACTTATGGGAATGCCAGTTTTAAGAGCAAAGGGTGAGGCTGAAGCACTTTGTGCACAGATAAATAGAGAAGGCTGGGTGGATGCTTGTATTACAGTTGATAGTGATGCATTTCTTCATGGAGCTAAATGCATAATAAAGTGTCTCCAAGCAGATTGTAAAGAGCCCATTATAGAATGCTATAGGGCATCTGATATTGATATGATTCTTGGTTTGAAGA

Fln Alignment:

biogeco3_mira_c19161___AECIKLERNPVFNRSIEECVELLELMGMPVLRAKGEAEALCAQINREGWVDACITVDSDAFLHGAKCIIKCLQADCKEPIIECYRASDIDMILGLK
Q64MA3__________________ADALVQPRNAKFTRYVEDCVELLEYLGMPVLRAKGEGEALCAQLNNQGHVDACITSDSDAFLFGAKTVIKVLRSNCKEP-FECYNMADIESGLGLK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain