SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene21050

Length: 437 nt

UniGene Fasta

>biog3_v1.0_unigene21050
AATGTAAAACAACGGTTTTAGAGGAAAGTTTTTCCTCCCAGAATGAACATATAAGAAACTTATGCATAAAGCTGGAAATTGCAAATCAAAAGCTAGAGATAGCAGAATCCTCTGCCTTACAATACAAAGCCATAGATGGCGAACAAAAGCAAAAAATTGAAGATTTGCGAAAACGCCTTGAAGAAGCTGAACTTAAAAATTTTGAAGGAGAGCTTCTAAGAAGAAAGTTGCATAACACTATCTTGGAACTTAAAGGAAATATTAGGGTCTTTTGTAGAGTAAGACCAATATTGCCAGAAGATGATTGCACAAGTGTAGAGTCACCGATTCTGCAATATCCTACATCGACTGAGCTTGTTGGCCGTTGCATTGACCTAATACAGGGTCCAGGACAAAAACATTCATTTAGCTTTGATAAAGTATTTGGACCAGAAGCT

Ace file of the UniGene biog3_v1.0_unigene21050

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11669	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinesin 1 [Arabidopsis thaliana] sp\|Q07970.1\|ATK1_ARATH RecName: Full=Kinesin-1; AltName: Full=Kinesin-like protein A dbj\|BAA01972.1\| kinesin-like motor protein heavy chain [Arabidopsis thaliana] emb\|CAA17546.1\| kinesin-related protein katA [Arabidopsis t	-	-	9.94922e-44	50%
FL-Next	sp=Kinesin-3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	kinesin-like protein	-	-	0.0	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Minus-end-directed kinesin ATPase.	EC:3.6.4.5	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	anastral spindle assembly involved in male meiosis	GO:0009971	Biological Process	69%
Blast2go	specification of carpel identity	GO:0010094	Biological Process	69%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	69%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	69%
Blast2go	minus-end-directed microtubule motor activity	GO:0008569	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	69%
Blast2go	minus-end kinesin complex	GO:0005872	Cellular Component	69%
Blast2go	phragmoplast	GO:0009524	Cellular Component	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P46875

Fln msg: Distance to subject end: 301 aas, your sequence is shorter than subject: 145 - 754

Fln protein: CKTTVLEESFSSQNEHIRNLCIKLEIANQKLEIAESSALQYKAIDGEQKQKIEDLRKRLEEAELKNFEGELLRRKLHNTILELKGNIRVFCRVRPILPEDDCTSVESPILQYPTSTELVGRCIDLIQGPGQKHSFSFDKVFGPEA

Protein Length: 146

Fln nts: AATGTAAAACAACGGTTTTAGAGGAAAGTTTTTCCTCCCAGAATGAACATATAAGAAACTTATGCATAAAGCTGGAAATTGCAAATCAAAAGCTAGAGATAGCAGAATCCTCTGCCTTACAATACAAAGCCATAGATGGCGAACAAAAGCAAAAAATTGAAGATTTGCGAAAACGCCTTGAAGAAGCTGAACTTAAAAATTTTGAAGGAGAGCTTCTAAGAAGAAAGTTGCATAACACTATCTTGGAACTTAAAGGAAATATTAGGGTCTTTTGTAGAGTAAGACCAATATTGCCAGAAGATGATTGCACAAGTGTAGAGTCACCGATTCTGCAATATCCTACATCGACTGAGCTTGTTGGCCGTTGCATTGACCTAATACAGGGTCCAGGACAAAAACATTCATTTAGCTTTGATAAAGTATTTGGACCAGAAGCT

Fln Alignment:

biogeco3_mira_c19097___TVLEESFSSQNEHIRNLCIKLEIANQKLEIAESSALQYKAIDGEQKQKIEDLRKRLEEAELKNFEGELLRRKLHNTILELKGNIRVFCRVRPILPEDDCTSVESPILQYPTSTELVGRCIDLIQGPGQKHSFSFDKVFGPEA
P46875__________________TELETTCSSQSTQIRQLQDRLVNSERRLQVSDLSTFEKMNEYEDQKQSIIDLKSRVEEAELKLVEGEKLRKKLHNTILELKGNIRVFCRVRPLLPGEN-NGDEGKTISYPTSLEALGRGIDLMQN-AQKHAFTFDKVFAPTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain