SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20887

Length: 224 nt

UniGene Fasta

>biog3_v1.0_unigene20887
AATGTCAACGTGGTCTCCTCTGTCGTCATGGTGCCCAAGGAATTAATTACTCAGCGGATGCAAGCCGGGGCCGCTGGCCGTTCTTGGCAAGTTTTGTTAGCCACCATAGAGCGCGAGGGCATCCGGGGTTTGTATGCCGGGTATTCCGCGACCATTTTGAGAAACCTGCCCACGGCGTGCTCAGCTTTTCCTCTTTTGAGTATCTTAAGGCTATCGTGCTGAGT

Ace file of the UniGene biog3_v1.0_unigene20887

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9464	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SJF9_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	mitochondrial substrate carrier	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	response to iron ion	GO:0010039	Biological Process	78%
Blast2go	iron ion transport	GO:0006826	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN91

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 127 aas, your sequence is shorter than subject: 74 - 386

Fln protein: NVNVVSSVVMVPKELITQRMQAGAAGRSWQVLLATIEREGIRGLYAGYSATILRNLPTACSAFPLLSILRLSC*

Protein Length: 75

Fln nts: AATGTCAACGTGGTCTCCTCTGTCGTCATGGTGCCCAAGGAATTAATTACTCAGCGGATGCAAGCCGGGGCCGCTGGCCGTTCTTGGCAAGTTTTGTTAGCCACCATAGAGCGCGAGGGCATCCGGGGTTTGTATGCCGGGTATTCCGCGACCATTTTGAGAAACCTGCCCACGGCGTGCTCAGCTTTTCCTCTTTTGAGTATCTTAAGGCTATCGTGCTGAGT

Fln Alignment:

biogeco3_mira_c18861___PKELITQRMQAGAAGRSWQVLLATIEREGIRGLYAGYSATILRNLPTACSAFPLLSILR
B8LN91__________________PKELITQRMQAGAPGRSWQVLLATVEREGIWGLYAGYSATILRNLPTGVLSFSSFEYLK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain