SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20873

Length: 350 nt

UniGene Fasta

>biog3_v1.0_unigene20873
AATGTTATTATGGCGTGGACACTCCGAGCAGAGAGAAACTGATATCCTATAGGATGAGCATTGAGGAGACCAGAAAATATATCGGCGCTGATTCCCTCGCTTTCTTGCCTCTACACAGGCTGAGGGAGATGTTGGGGGAAGAGTCACCATCCTTCTGTTACGCCTGCTTCTCAGGGTCATATCCTGTTCCACCTCGCGACGCTTTGCAAGAAGCCGAGGGGAAAGAAAGGACAGAGGCAGGTGAAGAGGAAGAGGACAGATTTGCAGGATTCTTGAATCAACCTGAAAGAGATATTAAGTTGGCGAATTCTCTTGATTCCAGATCTTTAGAAGCAGCTCTGGATGACATT

Ace file of the UniGene biog3_v1.0_unigene20873

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10731	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Amidophosphoribosyltransferase n=2 Tax=Populus trichocarpa RepID=B9H0Z2_POPTR	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	amidophosphoribosyltransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amidophosphoribosyltransferase.	EC:2.4.2.14	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	purine nucleotide biosynthetic process	GO:0006164	Biological Process	88%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	88%
Blast2go	nucleoside metabolic process	GO:0009116	Biological Process	88%
Blast2go	purine base biosynthetic process	GO:0009113	Biological Process	88%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	88%
Blast2go	metal ion binding	GO:0046872	Molecular Function	88%
Blast2go	amidophosphoribosyltransferase activity	GO:0004044	Molecular Function	88%
Blast2go	cell wall	GO:0005618	Cellular Component	88%
Blast2go	plastid stroma	GO:0009532	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Amidophosphoribosyl transferase	IPR005854	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-
Sma3	Phosphoribosyltransferase	IPR000836	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMG0

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 116 - 610

Fln protein: CYYGVDTPSREKLISYRMSIEETRKYIGADSLAFLPLHRLREMLGEESPSFCYACFSGSYPVPPRDALQEAEGKERTEAGEEEEDRFAGFLNQPERDIKLANSLDSRSLEAALDDI

Protein Length: 117

Fln nts: AATGTTATTATGGCGTGGACACTCCGAGCAGAGAGAAACTGATATCCTATAGGATGAGCATTGAGGAGACCAGAAAATATATCGGCGCTGATTCCCTCGCTTTCTTGCCTCTACACAGGCTGAGGGAGATGTTGGGGGAAGAGTCACCATCCTTCTGTTACGCCTGCTTCTCAGGGTCATATCCTGTTCCACCTCGCGACGCTTTGCAAGAAGCCGAGGGGAAAGAAAGGACAGAGGCAGGTGAAGAGGAAGAGGACAGATTTGCAGGATTCTTGAATCAACCTGAAAGAGATATTAAGTTGGCGAATTCTCTTGATTCCAGATCTTTAGAAGCAGCTCTGGATGACATT

Fln Alignment:

biogeco3_mira_c18841___CYYGVDTPSREKLISYRMSIEETRKYIGADSLAFLPLHRLREMLGEESPSFCYACFSGSYPVPPRDAL
B8LMG0__________________CYYGVDTPSREQLISHKMTVEQTRKFIGADSLAFLPLARLRRMLGEEAPSYCDACFSGMYPVPPRDVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain