SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20868

Length: 371 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20868
AATGTAGTTGAAGAGGCATTAACTACAATCATATGGGTGGCCTCGGCTCTTCACGCTGCAGTTAATTTTGGGCAATACCCTTACGCCGGATACATGCCTAATCGGCCCACCATAAGCAGAAGGTTCATTCCAGAAGAAGGGTCCCAAGAATTTGCAGAGCTGGTAGAGAATCCAGACTTGTTTTACCTCAAAACGATTAATAACCAATTTCAAACGACCCTGGGCATAGCCCTCATAGAAATTTTGTCCAGTCAATCAACAGATGAGGTATATTTGGGGCAGAGAGCCACCAATGAATGGACTGACGAATAAACGTGTGATAGAGGCCTTCAACCGTTTTGGAACAAAGTTAAAGGAGATAGAGAAACATT

Ace file of the UniGene biog3_v1.0_unigene20868 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18404	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase (Fragment) n=5 Tax=Vitis vinifera RepID=D7U236_VITVI	-	-	57%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	lipoxygenase	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 51 aas, your sequence is shorter than subject: 104 - 930

Fln protein: NVVEEALTTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRFIPEEGSQEFAELVENPDLFYLKTINNQFQTTLGIALIEILSSQSTDEVYLGQRATNEWTDE*

Protein Length: 105

Fln nts: AATGTAGTTGAAGAGGCATTAACTACAATCATATGGGTGGCCTCGGCTCTTCACGCTGCAGTTAATTTTGGGCAATACCCTTACGCCGGATACATGCCTAATCGGCCCACCATAAGCAGAAGGTTCATTCCAGAAGAAGGGTCCCAAGAATTTGCAGAGCTGGTAGAGAATCCAGACTTGTTTTACCTCAAAACGATTAATAACCAATTTCAAACGACCCTGGGCATAGCCCTCATAGAAATTTTGTCCAGTCAATCAACAGATGAGGTATATTTGGGGCAGAGAGCCACCAATGAATGGACTGACGAATAAACGTGTGATAGAGGCCTTCAACCGTTTTGGAACAAAGTTAAAGGAGATAGAGAAACATT

Fln Alignment:

biogeco3_mira_c18835___VEEALTTIIWVASALHAAVNFGQYPYAGYMPNRPTISRRFIPEEGSQEFAELVENPDLFYLKTINNQFQTTLGIALIEILSSQSTDEVYLGQ--RATNEWTDE*TCDRGLQPFWNK
B8LLK5__________________VVEAVTTIIWIASAHHAAVNFGQYSYGGYMPNLPTMSRRLIPEKGSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVD----DSGVEEAFNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain