SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20855

Length: 328 nt

UniGene Fasta

>biog3_v1.0_unigene20855
AATGTATTCATTCGGCAAACCCCCTGGCGCGCAGGCACGAGAGGGTTCCCATCGTGCCTTTCTACGAGTGCGTTTCCGTGGCCAAAGCGTTCCTCCCGCCACTGCCGCAAACTTCGTCGCTTCAGGACTCCGACGCGCCGGGTACCCTGGACTACGATGATGACGAGGAGGACGACGAGATCTACGCTGCGGAGGCCGCATCGTGGCTGTTGCCCAATCCTAAAGCGTCGGCCGAGGGTACCAAGAATTGTGACGACGGGGTAAGCTGCTTCGGCGTCGACGCGGGTCCTAACAAGGCAGCCGGGGGCTATTTCAGCGTTGTCGATTT

Ace file of the UniGene biog3_v1.0_unigene20855

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1909	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	CONSTANS-like protein n=14 Tax=Picea RepID=A6YS25_PICAB	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	constans-like protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	80%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	CCT domain	IPR010402	-	0.0	-
Sma3	Zinc finger, B-box	IPR000315	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW83

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 108 - 291

Fln protein: CIHSANPLARRHERVPIVPFYECVSVAKAFLPPLPQTSSLQDSDAPGTLDYDDDEEDDEIYAAEAASWLLPNPKASAEGTKNCDDGVSCFGVDAGPNKAAGGYFSVVD

Protein Length: 109

Fln nts: AATGTATTCATTCGGCAAACCCCCTGGCGCGCAGGCACGAGAGGGTTCCCATCGTGCCTTTCTACGAGTGCGTTTCCGTGGCCAAAGCGTTCCTCCCGCCACTGCCGCAAACTTCGTCGCTTCAGGACTCCGACGCGCCGGGTACCCTGGACTACGATGATGACGAGGAGGACGACGAGATCTACGCTGCGGAGGCCGCATCGTGGCTGTTGCCCAATCCTAAAGCGTCGGCCGAGGGTACCAAGAATTGTGACGACGGGGTAAGCTGCTTCGGCGTCGACGCGGGTCCTAACAAGGCAGCCGGGGGCTATTTCAGCGTTGTCGATTT

Fln Alignment:

biogeco3_mira_c18815___IHSANPLARRHERVPIVPFYECVSVAKAFL--PPLPQTSSLQDSDAPGTLXXXXXXXXXXXXXXXXXSWLLPNPKASAEGTKNCDDGVSCFGVDAGP--NKAAGGYFSVVD
A9NW83__________________IHSANPLARRHDRVPIVPFYECASVAKTFLPPPPPPPTSSLQDSDVVGTLDYEDHDDDDEIYAAEAASWLLPNPKSSAEGTKNCDDGGSCFGVDAGPPVNKAAGGYFSVVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain