SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20796

Length: 252 nt

UniGene Fasta

>biog3_v1.0_unigene20796
CCGGTCTGATAAAATATGTACATATCCAATAGAATGGATTAGGATGGGCACAACTGTTGCCACCAATGCTCTGTTGGAGAGAAAGGGAGAGCGTTTAGCTTTGTGTGTGACAAAAGGTTTCAAGGATTTGCTTCAGATAGGCAACCAAGCTCGTCCAAAAATATTCGACCTAACTGTTGCGACACCTTCACCGCTGTATGCAGAAGTAATAGAGGCAGAGGAAAGCGTTCAGCTTGCTTTGGATGGAGAAGT

Ace file of the UniGene biog3_v1.0_unigene20796

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41276	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5-oxoprolinase -like protein [Arabidopsis thaliana]	-	-	1.0e-34	72%
FL-Next	sp=5-oxoprolinase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Blast2go	at5g37830 k22f20_70	-	-	7.35822e-42	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	5-oxoprolinase (ATP-hydrolyzing).	EC:3.5.2.9	-	7.35822e-42	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		7.35822e-42	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	glutathione catabolic process	GO:0006751	Biological Process	7.35822e-42	79%
Blast2go	5-oxoprolinase (ATP-hydrolyzing) activity	GO:0017168	Molecular Function	7.35822e-42	79%

Source	InterPros	Term	Type	Identity
Sma3	Hydantoinase/oxoprolinase	IPR002821	-	-
Sma3	Hydantoinase B/oxoprolinase	IPR003692	-	-
Sma3	Hydantoinaseoxoprolinase, N-terminal	IPR008040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FIZ7

Fln msg: Distance to subject end: 1116 aas, your sequence is shorter than subject: 83 - 1266

Fln protein: RSDKICTYPIEWIRMGTTVATNALLERKGERLALCVTKGFKDLLQIGNQARPKIFDLTVATPSPLYAEVIEAEESVQLALDGE

Protein Length: 84

Fln nts: CCGGTCTGATAAAATATGTACATATCCAATAGAATGGATTAGGATGGGCACAACTGTTGCCACCAATGCTCTGTTGGAGAGAAAGGGAGAGCGTTTAGCTTTGTGTGTGACAAAAGGTTTCAAGGATTTGCTTCAGATAGGCAACCAAGCTCGTCCAAAAATATTCGACCTAACTGTTGCGACACCTTCACCGCTGTATGCAGAAGTAATAGAGGCAGAGGAAAGCGTTCAGCTTGCTTTGGATGGAGAAGT

Fln Alignment:

biogeco3_mira_c18725___RSDKICTYPIEWIRMGTTVATNALLERKGERLALCVTKGFKDLLQIGNQARPKIFDLTVATPSPLYAEVIEAEESVQLALDGE
Q9FIZ7__________________RTSKIPTDKIQWIRMGTTVATNALLERKGERIALCVTKGFKDLLQIGNQARPDIFDLTVAKPSNLYEEVIEVDERVVLALEDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain