SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20771

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20771
ATGCATCTATCCGTCTAAATATTCGGAGAACTGGATTGCTAAAGAAAGGAGATGAGACATTCGGGAGCCAGATCTTAGTCAAAGTTGTAAAGAACAAGTTGGCGCCTCCATTCAAAAGTGCAGAATTTGAAATTGAGTTTGGCAGGGGCATTTCGTGTGAAGCGGAGATTTTGGATATGGGATGTAAGCATGACGTGATTACAAAATCAGGGAACTTTTACAGGTTAAATGGGGAAATTTTCAATGGTAAGGAA

Ace file of the UniGene biog3_v1.0_unigene20771 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene961	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair protein recA-like 3 [Arabidopsis thaliana] sp\|Q9ZUP2.2\|RECA3_ARATH RecName: Full=DNA repair protein recA homolog 3, mitochondrial; AltName: Full=Recombinase A homolog 3; Flags: Precursor gb\|ABM06015.1\| At2g19490 [Arabidopsis thaliana] gb\|AEC068	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	dna repair protein reca homolog mitochondrial-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	DNA recombination	GO:0006310	Biological Process	81%
Blast2go	DNA repair	GO:0006281	Biological Process	81%
Blast2go	SOS response	GO:0009432	Biological Process	81%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	81%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	81%
Blast2go	DNA-dependent ATPase activity	GO:0008094	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA recombination and repair protein RecA	IPR013765	-	-
Sma3		IPR001553	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRS8

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 84 - 454

Fln protein: ASIRLNIRRTGLLKKGDETFGSQILVKVVKNKLAPPFKSAEFEIEFGRGISCEAEILDMGCKHDVITKSGNFYRLNGEIFNGKE

Protein Length: 85

Fln nts: ATGCATCTATCCGTCTAAATATTCGGAGAACTGGATTGCTAAAGAAAGGAGATGAGACATTCGGGAGCCAGATCTTAGTCAAAGTTGTAAAGAACAAGTTGGCGCCTCCATTCAAAAGTGCAGAATTTGAAATTGAGTTTGGCAGGGGCATTTCGTGTGAAGCGGAGATTTTGGATATGGGATGTAAGCATGACGTGATTACAAAATCAGGGAACTTTTACAGGTTAAATGGGGAAATTTTCAATGGTAAGGAA

Fln Alignment:

biogeco3_mira_c18690___ASIRLNIRRTGLLKKGDETFGSQILVKVVKNKLAPPFKSAEFEIEFGRGISCEAEILDMGCKHDVITKSGNFYRLNGEIFNGKE
B8LRS8__________________ASIRLNIRRTGLLKRGDETFGSQILVKVAKNKLAPPFKTAEFEIEFGRGISCEAEILDLGCKHDMITKSGHHYKLNGETFNGKE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
59	66		33		0.997452
60		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain