SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20768

Length: 219 nt

UniGene Fasta

>biog3_v1.0_unigene20768
AATGTATGTTAAGTGTTCGCATACCTGATAGAATGAGGGAGATATGCTTGGGAATCATGGGGAATTTGGCTTGCCATGTGGTTCCAGAAAGAGCCATGGTTGCTAAGAATGGTTTGGTACAGATGGTTGTGCGGCAATTATTTTTCAAGGATTCTGCGAGTCTTTCTGAAACTTGCAGGTTGTTGAGTGCAGGACTGCGCAGTGGAGAGGCAGTCAGCT

Ace file of the UniGene biog3_v1.0_unigene20768

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12099	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	67%
Blast2go	arm repeat-containing protein	-	-	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SAI3

Fln msg: Distance to subject end: 306 aas, your sequence is shorter than subject: 72 - 637

Fln protein: CMLSVRIPDRMREICLGIMGNLACHVVPERAMVAKNGLVQMVVRQLFFKDSASLSETCRLLSAGLRSGEAVS

Protein Length: 73

Fln nts: AATGTATGTTAAGTGTTCGCATACCTGATAGAATGAGGGAGATATGCTTGGGAATCATGGGGAATTTGGCTTGCCATGTGGTTCCAGAAAGAGCCATGGTTGCTAAGAATGGTTTGGTACAGATGGTTGTGCGGCAATTATTTTTCAAGGATTCTGCGAGTCTTTCTGAAACTTGCAGGTTGTTGAGTGCAGGACTGCGCAGTGGAGAGGCAGTCAGCT

Fln Alignment:

biogeco3_mira_c18687___DRMREICLGIMGNLACHVVPERAMVAKNGLVQMVVRQLFFKDSASLSETCRLLSAGLRSGEA
A9SAI3__________________DRMREICLGILGNLACHTKPEMIMVNFEGLVPTVIQQLQFEDPPSLCETCRLLSAGLHSDAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain