SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20689

Length: 304 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20689
GGGCAGTTCCATTCACTGCAATGATGACTCTTGACACGCAACCTAAAGACTGCAATGCTGTTAAATCTGGAGAGCTTGCCATTCATTCAGAGAAGGTCAATCTTAAGGGGAAGCCAATTAGGTTGTTTCTCCAAAATGCAGAAAAGTGGTTGATGGATGATCTTTACATAAGTTCTGGACCTATTCAGTATCAAGGGCCTGGATCAGATTCCAGGTTAATAACAGTTTCAATTAAAGACAAAGACTAGGTTGGAGACATCCAAGGAATTATAGCTCTAGTATTCACTCTCCCTTTCTGGCAACT

Ace file of the UniGene biog3_v1.0_unigene20689 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24837	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha; Short=PFP; AltName: Full=6-phosphofructokinase, pyrophosphate dependent; AltName: Full=PPi-PFK; AltName: Full=Pyrophosphate-dependent 6-phosphofructose-1-kinase emb\|CAA8	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	pyrophosphate-dependent phosphofructokinase alpha subunit	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.9-	-	0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	0.0	70%
Blast2go	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	GO:0047334	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	0.0	-
Sma3	Pyrophosphate-dependent phosphofructokinase PfpB	IPR011183	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM03

Fln msg: your sequence is shorter than subject: 82 - 558

Fln protein: AVPFTAMMTLDTQPKDCNAVKSGELAIHSEKVNLKGKPIRLFLQNAEKWLMDDLYISSGPIQYQGPGSDSRLITVSIKDKD*

Protein Length: 83

Fln nts: GGGCAGTTCCATTCACTGCAATGATGACTCTTGACACGCAACCTAAAGACTGCAATGCTGTTAAATCTGGAGAGCTTGCCATTCATTCAGAGAAGGTCAATCTTAAGGGGAAGCCAATTAGGTTGTTTCTCCAAAATGCAGAAAAGTGGTTGATGGATGATCTTTACATAAGTTCTGGACCTATTCAGTATCAAGGGCCTGGATCAGATTCCAGGTTAATAACAGTTTCAATTAAAGACAAAGACTAG___GTTGGAGACATCCAAGGAATTATAGCTCTAGTATTCACTCTCCCTTTCTGGCAACT

Fln Alignment:

biogeco3_mira_c18574___AVPFTAMMTLDTQPKDCNAVKSGELAIHSEKVNLKGKPIRLFLQNAEKWLMDDLYISSGPIQYQGPGSDSRLITVSIKDKD
B8LM03__________________AVPFTAMLTVDKRPKDCNAVIPGELAIHSEKVNLKGKPIRLLLQNAEKRLMDDVYISSGPIQYQGPGSDSRIMTVSIEAED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain