SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20624

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene20624
AATGTAGATATAGAAAAACCACAACTCAGAGAACCCTTATTAACGAACATGGTGAAAGCAGAGGGGGCAGAAAACCCTGAAATATCTGTGCAGGCTAAAGCTGAAAGCCGTTCTACCGAACTACAGCCTTCACAAGGCCAAAGCACTGAGAACCAGATTGTATCCAATCTACCCCTCCTCGTATAGGCGAGGATCACACTATATTTCAGGCGATACAGAAGTTCGACTTCTGGTTATTA

Ace file of the UniGene biog3_v1.0_unigene20624

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene366	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	major facilitator family protein [Arabidopsis thaliana] emb\|CAB45456.1\| putative protein [Arabidopsis thaliana] emb\|CAB80212.1\| putative protein [Arabidopsis thaliana] gb\|AEE86440.1\| major facilitator family protein [Arabidopsis thaliana]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	membrane	GO:0016020	Cellular Component	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%
Blast2go	response to karrikin	GO:0080167	Biological Process	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-
Sma3	Nodulin-like	IPR010658	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 235 aas, your sequence is shorter than subject: 80 - 626

Fln protein: NVDIEKPQLREPLLTNMVKAEGAENPEISVQAKAESRSTELQPSQGQSTxxxxCIQSTPPRIGEDHTIFQAIQKFDFWLL

Protein Length: 81

Fln nts: AATGTAGATATAGAAAAACCACAACTCAGAGAACCCTTATTAACGAACATGGTGAAAGCAGAGGGGGCAGAAAACCCTGAAATATCTGTGCAGGCTAAAGCTGAAAGCCGTTCTACCGAACTACAGCCTTCACAAGGCCAAAGCACTxxxxxxxxxxxxTGTATCCAATCTACCCCTCCTCGTATAGGCGAGGATCACACTATATTTCAGGCGATACAGAAGTTCGACTTCTGGTTATTA

Fln Alignment:

biogeco3_mira_c18484___VDIEKPQLREPLLTNMVKAEGAENPEISVQAKAESRSTELQPSQGQSTENQxxxxxxxxxxxxxxxxxxxxxEPDCIQSTPPRIGEDHTIFQAIQKFDFWLL
B8LRH5__________________LDIEK-QVREPLLTNVEEAKGAENPETSVQAKAESIATEPRPSQSESVATExxxxxxxxxxxxxxxxxxxxxENQIVCNSKPRIGEDHTIFQAIQKFDFWLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain