SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20607

Length: 471 nt

UniGene Fasta

>biog3_v1.0_unigene20607
AATGTAAACAGGGCTATGTACAACCAGTATTTGTGGATGAGAGTGAGGCACCTCAATTGTCTATTCAAGCTGGTCGACATCCCGTTTTAGAGTCAACTCTACAGGAGAGCTTTGTACCAAATGATACCTTTTTGCATGGCAGTAGTGAGCGCTGTCAAGTTATAACTGGACCAAACATGGGTGGTAAAAGTTGCTATATACGTCAAGTAGCTTTGATTGTAATTATGGCCCAGGTTGGTTCATTTGTACCTGCAGAATTTGCCAAGCTACATGCTTTTGACGCAGTTTTTACGAGAATGGGAGCATCTGATAGTATCCAGCATGGTTCAAGTACTTTCTTTGAGGAGTTAAGTGAAACCTCATCCATCCTGCAGAAATCTACACCTCGCTCACTTGTAATAATCGATGAATTGGGGCGAGGAACTAGCACCCATGATGGTGTTGCTATTGCATATGCAACGCTACATTTTC

Ace file of the UniGene biog3_v1.0_unigene20607

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4980	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA mismatch repair protein Msh3 [Arabidopsis thaliana] sp\|O65607.2\|MSH3_ARATH RecName: Full=DNA mismatch repair protein Msh3; Short=AtMsh3 emb\|CAA07684.1\| Msh3 protein [Arabidopsis thaliana] gb\|AEE85075.1\| DNA mismatch repair protein Msh3 [Arabidopsis th	-	-	51%
FL-Next	sp=DNA mismatch repair protein Msh3; Arabidopsis thaliana (Mouse-ear cress).	-	-	75%
Blast2go	dna mismatch repair protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	64%
Blast2go	mismatched DNA binding	GO:0030983	Molecular Function	64%
Blast2go	membrane	GO:0016020	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Sma3	DNA mismatch repair protein MutS, C-terminal	IPR000432	-	-
Sma3	Regulator of K+ conductance, N-terminal	IPR003148	-	-
Sma3	K+/H+ exchanger	IPR004771	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	DNA mismatch repair protein MutS-like, N-terminal	IPR007695	-	-
Sma3	DNA mismatch repair protein MutS, core	IPR007696	-	-
Sma3	DNA mismatch repair protein MutS, connector	IPR007860	-	-
Sma3	DNA mismatch repair protein MutS, clamp	IPR007861	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DNA mismatch repair protein MutS, N-terminal	IPR016151	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O65607

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 156 - 1081

Fln protein: CKQGYVQPVFVDESEAPQLSIQAGRHPVLESTLQESFVPNDTFLHGSSERCQVITGPNMGGKSCYIRQVALIVIMAQVGSFVPAEFAKLHAFDAVFTRMGASDSIQHGSSTFFEELSETSSILQKSTPRSLVIIDELGRGTSTHDGVAIAYATLHF

Protein Length: 157

Fln nts: AATGTAAACAGGGCTATGTACAACCAGTATTTGTGGATGAGAGTGAGGCACCTCAATTGTCTATTCAAGCTGGTCGACATCCCGTTTTAGAGTCAACTCTACAGGAGAGCTTTGTACCAAATGATACCTTTTTGCATGGCAGTAGTGAGCGCTGTCAAGTTATAACTGGACCAAACATGGGTGGTAAAAGTTGCTATATACGTCAAGTAGCTTTGATTGTAATTATGGCCCAGGTTGGTTCATTTGTACCTGCAGAATTTGCCAAGCTACATGCTTTTGACGCAGTTTTTACGAGAATGGGAGCATCTGATAGTATCCAGCATGGTTCAAGTACTTTCTTTGAGGAGTTAAGTGAAACCTCATCCATCCTGCAGAAATCTACACCTCGCTCACTTGTAATAATCGATGAATTGGGGCGAGGAACTAGCACCCATGATGGTGTTGCTATTGCATATGCAACGCTACATTTTC

Fln Alignment:

biogeco3_mira_c18461___QGYVQPVFVDESEAPQLSIQAGRHPVLESTLQESFVPNDTFLHGSSERCQVITGPNMGGKSCYIRQVALIVIMAQVGSFVPAEFAKLHAFDAVFTRMGASDSIQHGXXXXXXXXXXXXXILQKSTPRSLVIIDELGRGTSTHDGVAIAYATL
O65607__________________KNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain