SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20567

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene20567
AATGATTATTGAAGTATGCATAGTGTCTTTAATAACATCAATCTTATCATTTGGATTGCCGTTGTTAAGAAAATGCACTCCTTGTCCGGATCTGAAAGAGTACCCTGATATTGAATGCCCACGACCGTCAGGAACCTACGGAAATTATGTCAATTTCCATTGCTCCAAAGATGGAGAGTATAACGATCTTGCAACCATTTCTTAACACACAGGATGATGCCATTCGCAACTTATTCAG

Ace file of the UniGene biog3_v1.0_unigene20567

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene406	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	chloride channel protein CLC-d [Arabidopsis thaliana] sp\|P92943.2\|CLCD_ARATH RecName: Full=Chloride channel protein CLC-d; Short=AtCLC-d gb\|AED93540.1\| chloride channel protein CLC-d [Arabidopsis thaliana]	-	-	75%
FL-Next	sp=Chloride channel protein CLC-d; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	chloride channel protein clc-d	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	88%
Blast2go	response to metal ion	GO:0010038	Biological Process	88%
Blast2go	cellular anion homeostasis	GO:0030002	Biological Process	88%
Blast2go	chloride transport	GO:0006821	Biological Process	88%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	88%
Blast2go	voltage-gated chloride channel activity	GO:0005247	Molecular Function	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	trans-Golgi network	GO:0005802	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Chloride channel, voltage gated	IPR001807	-	-
Sma3	Chloride channel ClC-plant	IPR002251	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Chloride channel, core	IPR014743	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92943

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 354 aas, your sequence is shorter than subject: 68 - 792

Fln protein: MIIEVCIVSLITSILSFGLPLLRKCTPCPDLKEYPDIECPRPSGTYGNYVNFHCSKDGEYNDLATIS*

Protein Length: 69

Fln nts: AATGATTATTGAAGTATGCATAGTGTCTTTAATAACATCAATCTTATCATTTGGATTGCCGTTGTTAAGAAAATGCACTCCTTGTCCGGATCTGAAAGAGTACCCTGATATTGAATGCCCACGACCGTCAGGAACCTACGGAAATTATGTCAATTTCCATTGCTCCAAAGATGGAGAGTATAACGATCTTGCAACCATTTCTTAACACACAGGATGATGCCATTCGCAACTTATTCAG

Fln Alignment:

biogeco3_mira_c18400___IIEVCIVSLITSILSFGLPLLRKCTPCPDLKEYPDIECPRPSGTYGNYVNFHCSKDGEYNDLATI
P92943__________________IIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVNFFCKTDNEYNDLATI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain