SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20557

Length: 366 nt

UniGene Fasta

>biog3_v1.0_unigene20557
ATAATGTATCCACCTAGTACTATGCCTGCTAATGAATATGGTGTGATTCCACAAGGTTTCGAAGAGAGAATGAAGGGAAGAGGTCTGGTAATTAGGGGTTGGGCACCTCAGCTCTTGATCCTCTCTCACCCTTCTGTTGGGGCTTTTCTTTCCCACTGTGGGTGGAATTCTACCTTGGAGAGCATTACACTGGGAGTACCAATGATAACATGGCCTATGAGTGCAGATCAATACATAGATGCTCTGTTATTAGTTGATTATCTCAAGGTTGCAGTCAGGTTTTGTGAAGGCTCCACCACAGTGCCCAACAGAGATGACTTGAGAATTGCAGTTAAACGACTGCTGGCAAGTGAAGGAGAAGAAACG

Ace file of the UniGene biog3_v1.0_unigene20557

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1371	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RLH6_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	udp-glucoronosyl udp-glucosyl transferase family protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	66%
Blast2go	quercetin 4'-O-glucosyltransferase activity	GO:0080046	Molecular Function	66%
Blast2go	quercetin 7-O-glucosyltransferase activity	GO:0080044	Molecular Function	66%
Blast2go	quercetin 3-O-glucosyltransferase activity	GO:0080043	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX38

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 122 - 468

Fln protein: IMYPPSTMPANEYGVIPQGFEERMKGRGLVIRGWAPQLLILSHPSVGAFLSHCGWNSTLESITLGVPMITWPMSADQYIDALLLVDYLKVAVRFCEGSTTVPNRDDLRIAVKRLLASEGEET

Protein Length: 123

Fln nts: ATAATGTATCCACCTAGTACTATGCCTGCTAATGAATATGGTGTGATTCCACAAGGTTTCGAAGAGAGAATGAAGGGAAGAGGTCTGGTAATTAGGGGTTGGGCACCTCAGCTCTTGATCCTCTCTCACCCTTCTGTTGGGGCTTTTCTTTCCCACTGTGGGTGGAATTCTACCTTGGAGAGCATTACACTGGGAGTACCAATGATAACATGGCCTATGAGTGCAGATCAATACATAGATGCTCTGTTATTAGTTGATTATCTCAAGGTTGCAGTCAGGTTTTGTGAAGGCTCCACCACAGTGCCCAACAGAGATGACTTGAGAATTGCAGTTAAACGACTGCTGGCAAGTGAAGGAGAAGAAACG

Fln Alignment:

biogeco3_mira_c18387___PPSTMPANEYGVIPQGFEERMKGRGLVIRGWAPQLLILSHPSVGAFLSHCGWNSTLESITLGVPMITWPMSADQYIDALLLVDYLKVAVRFCEGSTTVPNRDDLRIAVKRLLASEGEE
A9NX38__________________PPSGMPADEYGVLPQGFEERMEGRGLIIRGWAPQLLILSHPSVGGFLSHCGWNSTLESITLGVPLITWPMAADQYYNARLLVEYLKVGVRFCEGATTVPNRDDWRIAVKRLLAREGEE

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
3	66	33			0.997461
5			33	66	0.997454
7			33	66	0.997454
42		33		66	0.997453
60		66		33	0.997467
190		66		33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain