SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20526

Length: 312 nt

UniGene Fasta

>biog3_v1.0_unigene20526
TTTCTGTGGATCTATTCACTTCCTCTGGCCAAGACTACTGTATTTCCAAGATCATTGATTCGAACTTTCATCTAGACCTCAATGCCTATGACAAGTATGGCACGTTGCATCTTAGTATCTTCTTTGCTCTGTCATATGGAGTGAGCTTCGCTACATTGACTGCCACGGTGGTTCATGTCCTTCTGTTTCATGGAAGAGAAATTTGGCATCTTAGCCTGTCTGCTTTCAGAGATCAAACAGTGGATGTGCACACCAGACTAATGAGGAGATACAAGCAGGTGCCAGAATCATGGTTCACAGGAATACTAGTCA

Ace file of the UniGene biog3_v1.0_unigene20526

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene55094	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter OPT family n=1 Tax=Populus trichocarpa RepID=B9GXV8_POPTR	-	-	5.0e-34	66%
FL-Next	sp=Oligopeptide transporter 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Blast2go	oligopeptide transporter	-	-	9.91698e-40	81%

Source	InterPros	Term	Type	Identity
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82485

Fln msg: Distance to subject end: 310 aas, your sequence is shorter than subject: 103 - 766

Fln protein: SVDLFTSSGQDYCISKIIDSNFHLDLNAYDKYGTLHLSIFFALSYGVSFATLTATVVHVLLFHGREIWHLSLSAFRDQTVDVHTRLMRRYKQVPESWFTGILV

Protein Length: 104

Fln nts: TTTCTGTGGATCTATTCACTTCCTCTGGCCAAGACTACTGTATTTCCAAGATCATTGATTCGAACTTTCATCTAGACCTCAATGCCTATGACAAGTATGGCACGTTGCATCTTAGTATCTTCTTTGCTCTGTCATATGGAGTGAGCTTCGCTACATTGACTGCCACGGTGGTTCATGTCCTTCTGTTTCATGGAAGAGAAATTTGGCATCTTAGCCTGTCTGCTTTCAGAGATCAAACAGTGGATGTGCACACCAGACTAATGAGGAGATACAAGCAGGTGCCAGAATCATGGTTCACAGGAATACTAGTCA

Fln Alignment:

biogeco3_mira_c18334___SVDLFTSSGQDYCISKIIDSNFHLDLNAYDKYGTLHLSIFFALSYGVSFATLTATVVHVLLFHGREIWHLSLSAFRDQTVDVHTRLMRRYKQVPESWFTGILV
O82485__________________SSSLFSSQGSKYNITSIIDSNFHLDLPAYERQGPLYLCTFFAISYGVGFAALSATIMHVALFHGREIWEQSKESFKEKKLDVHARLMQRYKQVPEWWFWCILV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain