SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20495

Length: 191 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20495
CAGACACGCAGCTTGTTACATTCCATGGAGATTTACCATACACATCTGAGGATATTATAAAAAGATAGAGATGCTTGGTGACACTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGCTGGTGATGGACAATAACAGTTTATTTGCAGTGAAAAGACATTGAGAAGTCTGGTGTAGCATACATT

Ace file of the UniGene biog3_v1.0_unigene20495 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene716	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] dbj\|BAC42970.1\| putative receptor like protein kinase [Arabidopsis thaliana] gb\|ACN59402.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AED97645.1\| leuci	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	atp binding protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	73%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	73%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	73%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 248 aas, your sequence is shorter than subject: 56 - 360

Fln protein: RHAACYIPWRFTIHI*GYYKKIEMLGDTDIIGSGGFGTVYKLVMDNNSLFAVKRH*

Protein Length: 57

Fln nts: CAGACACGCAGCTTGTTACATTCCATGGAGATTTACCATACACATCTGAGGATATTATAAAAAGATAGAGATGCTTGGTGACACTGACATCATTGGTTCTGGGGGATTTGGAACCGTGTACAAGCTGGTGATGGACAATAACAGTTTATTTGCAGTGAAAAGACATTGAGAAGTCTGGTGTAGCATACATT

Fln Alignment:

biogeco3_mira_c18295___KKIEMLGDTDIIGSGGFGTVYKLVMDNNSLFAVKR
B8LPH3__________________KKTLSLTNKDIIGTGGYGTVYKLVIDEHTVFAIKR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
32		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain