SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20482

Length: 342 nt

UniGene Fasta

>biog3_v1.0_unigene20482
AATGTAAAGCTTCAGGTGGTGAGCCCTGTCCCTGCGGACATCGATATCGCTACCTCTGTAGAACCCCATCACATATCGGCCATCGCACATGAGCTTGGCCTTCAACCCCAACATTACGAGCTGTATGGAAGACACAAGGCAAAGGTTCTATTGAGTGTGGCAGAGGAGCTACAGCATTCCCCGGATGGATTCTATGTGGTGGTTGGAGGCATTACTCCCACTCCTTTAGGGGAAGGAAAATCCACCACTACTGTCGGCCTATGTCAAGCACTTGGCGCTCACTTGGGCCAAAAGGTGGTGACATGCCTCCGTCAACCGAGTCAAGGACCAACCTTTGGATAA

Ace file of the UniGene biog3_v1.0_unigene20482

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1119	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	10-formyltetrahydrofolate synthetase n=3 Tax=rosids RepID=B9GLK3_POPTR	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	10-formyltetrahydrofolate synthetase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Formate--tetrahydrofolate ligase.	EC:6.3.4.3	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	One carbon pool by folate	00670	89%
Blast2go	Carbon fixation pathways in prokaryotes	00720	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	folic acid-containing compound biosynthetic process	GO:0009396	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	formate-tetrahydrofolate ligase activity	GO:0004329	Molecular Function	89%
Blast2go	ATP binding	GO:0005524	Molecular Function	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Formate-tetrahydrofolate ligase, FTHFS	IPR000559	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWA2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 478 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 114 - 602

Fln protein: NVKLQVVSPVPADIDIATSVEPHHISAIAHELGLQPQHYELYGRHKAKVLLSVAEELQHSPDGFYVVVGGITPTPLGEGKSTTTVGLCQALGAHLGQKVVTCLRQPSQGPTFG*

Protein Length: 115

Fln nts: A_-_ATGTAAAGCTTCAGGTGGTGAGCCCTGTCCCTGCGGACATCGATATCGCTACCTCTGTAGAACCCCATCACATATCGGCCATCGCACATGAGCTTGGCCTTCAACCCCAACATTACGAGCTGTATGGAAGACACAAGGCAAAGGTTCTATTGAGTGTGGCAGAGGAGCTACAGCATTCCCCGGATGGATTCTATGTGGTGGTTGGAGGCATTACTCCCACTCCTTTAGGGGAAGGAAAATCCACCACTACTGTCGGCCTATGTCAAGCACTTGGCGCTCACTTGGGCCAAAAGGTGGTGACATGCCTCCGTCAACCGAGTCAAGGACCAACCTTTGGATAA

Fln Alignment:

biogeco3_mira_c18275___KLQVVSPVPADIDIATSVEPHHISAIAHELGLQPQHYELYGRHKAKVLLSVAEELQHSPDGFYVVVGGITPTPLGEGKSTTTVGLCQALGAHLGQKVVTCLRQPSQGPTFG
A9NWA2__________________KLQVVSPVPADIDIASSVEPYHISAIAHELGLQPHHYELYGKCKAKVLLSVAEELQHSPDGFYVVVGGITPTPLGEGKSTTTVGLCQALGAHLGQKVVTCLRQPSQGPTFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain