SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20477

Length: 219 nt

UniGene Fasta

>biog3_v1.0_unigene20477
AATGTTTTCCTCACATTCTCCGTTGAAGAAGCTCAATCCAATGTCAATCTCTACTACAATTTGCAGGTCGTTTCCCTCAAGGACTAATGGACGCCACACTCCCATTGCAACCACCTTTACTTGCCATTTGCAGTACAAGTTGCACCATCCTGCAAGGGCATCAACTGCTACTCAAGGGCCCGTTAAGACCGATGAAATGACAGTATCAATAACAGGAGC

Ace file of the UniGene biog3_v1.0_unigene20477

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24990	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gb\|AAG40052.1\|AF324701_1 At2g21280 [Arabidopsis thaliana] gb\|AAG41477.1\|AF326895_1 unknown protein [Arabidopsis thaliana] gb\|AAK00395.1\|AF339713_1 unknown protein [Arabidopsis t	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	0.0	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF1731, C-terminal	IPR013549	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Sugar nucleotide epimerase YfcH, putative	IPR010099	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRG9

Fln msg: Distance to subject end: 295 aas, your sequence is shorter than subject: 72 - 356

Fln protein: MFSSHSPLKKLNPMSISTTICRSFPSRTNGRHTPIATTFTCHLQYKLHHPARASTATQGPVKTDEMTVSITG

Protein Length: 73

Fln nts: A_-_ATGTTTTCCTCACATTCTCCGTTGAAGAAGCTCAATCCAATGTCAATCTCTACTACAATTTGCAGGTCGTTTCCCTCAAGGACTAATGGACGCCACACTCCCATTGCAACCACCTTTACTTGCCATTTGCAGTACAAGTTGCACCATCCTGCAAGGGCATCAACTGCTACTCAAGGGCCCGTTAAGACCGATGAAATGACAGTATCAATAACAGGAGC

Fln Alignment:

biogeco3_mira_c18266___MSISTT-ICRSFPSRTNGRHTPIATTFTCHLQYKLHHPARASTATQGPVKTDEMTVSITG
A9NRG9__________________MSTSTTPICRPFSPRSNGRHMPIATTFTCYLQYKLQQPARASTTTQRPAKTDEMTISITG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain