SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20470

Length: 245 nt

UniGene Fasta

>biog3_v1.0_unigene20470
ATTCCGGAGTCGCCAAGGTGGTTGGCTAAGGTTGGTAAGAATGAAGAGTTTGAAGCAGCATTGCAAACCCTTCGTGGAAAGGATTGTGATGTTTCAAGCGAAGCGGCTGAAATCAGGGAATTTGTGGCAGAGTTAGAGAGAATCCCTAAGGCCAGCATAAAGGACTTATTCCAACGCAGATATGCACACATTATTGTTGGAGTTGGTTTGATGGTGTTCCAGCAATTGGCGGGAATCAATGCCAT

Ace file of the UniGene biog3_v1.0_unigene20470

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10686	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7T6L7_VITVI	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	sugar transporter erd6-like 16-like	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 81 - 501

Fln protein: IPESPRWLAKVGKNEEFEAALQTLRGKDCDVSSEAAEIREFVAELERIPKASIKDLFQRRYAHIIVGVGLMVFQQLAGINA

Protein Length: 82

Fln nts: ATTCCGGAGTCGCCAAGGTGGTTGGCTAAGGTTGGTAAGAATGAAGAGTTTGAAGCAGCATTGCAAACCCTTCGTGGAAAGGATTGTGATGTTTCAAGCGAAGCGGCTGAAATCAGGGAATTTGTGGCAGAGTTAGAGAGAATCCCTAAGGCCAGCATAAAGGACTTATTCCAACGCAGATATGCACACATTATTGTTGGAGTTGGTTTGATGGTGTTCCAGCAATTGGCGGGAATCAATGCCAT

Fln Alignment:

biogeco3_mira_c18257___IPESPRWLAKVGKNEEFEAALQTLRGKDCDVSSEAAEIREFVAELERIPKASIKDLFQRRYAH-IIVGVGLMVFQQLAGINA
D5A8F2__________________IPESPRWLAKVGHDKEFDEALQALLGKDCDVSVEAAEIREYVEELENLPRAKILDLFRPKYMHSVIVGVGLMVFQQLGGINA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain