SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20444

Length: 442 nt

UniGene Fasta

>biog3_v1.0_unigene20444
AATGTGTCCTAATCTTTGCGGTGTATTATGTATTTTGTTCCAAGTATTGTTGTAGCACAGTGGATGGTAGAGAGGAGGATCTAGATCAGTCACCATAGAATGGAGATGATAGTAAAAGCAACTACAATTACGATCTTGCTACCAGTCATCCTATGTTGCATCCCATGTGGAGAAAGTGGAAGCAGAGGCAGGAGTTTGGCGCAGCGTTTACCAGCCCTAGGCGTTGACTATGGACAAACTGCAGACAATCTTCCTCCACCATCTGCAGTAGCAAAGCTGGTTCAGAGTACAAGTATTTCAAAGTTGAGACTATATGGAGCAGATCCTGCAATTCTTCAAGCATTTGCTAACACAGGAATTGGGTTAGTTGTAGGCATTGGTAACGATCAAATCCCATCTCTGAACCNGCTAGCTGTAGCACAGAATTGGATTAAGAACAATA

Ace file of the UniGene biog3_v1.0_unigene20444

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7741	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glucan endo-1,3-beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9RBE5_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	glucan endo- -beta-glucosidase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Glycosaminoglycan degradation	00531	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	cation binding	GO:0043169	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	X8	IPR012946	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX81

Fln msg: Distance to subject end: 377 aas, your sequence is shorter than subject: 114 - 491

Fln protein: MEMIVKATTITILLPVILCCIPCGESGSRGRSLAQRLPALGVDYGQTADNLPPPSAVAKLVQSTSISKLRLYGADPAILQAFANTGIGLVVGIGNDQIPSLNQLAVAQNWIKNN

Protein Length: 115

Fln nts: AATGTGTCCTAATCTTTGCGGTGTATTATGTATTTTGTTCCAAGTATTGTTGTAGCACAGTGGATGGTAGAGAGGAGGATCTAGATCAGTCACCATAGA_-_ATGGAGATGATAGTAAAAGCAACTACAATTACGATCTTGCTACCAGTCATCCTATGTTGCATCCCATGTGGAGAAAGTGGAAGCAGAGGCAGGAGTTTGGCGCAGCGTTTACCAGCCCTAGGCGTTGACTATGGACAAACTGCAGACAATCTTCCTCCACCATCTGCAGTAGCAAAGCTGGTTCAGAGTACAAGTATTTCAAAGTTGAGACTATATGGAGCAGATCCTGCAATTCTTCAAGCATTTGCTAACACAGGAATTGGGTTAGTTGTAGGCATTGGTAACGATCAAATCCCATCTCTGAACCaGCTAGCTGTAGCACAGAATTGGATTAAGAACAATA

Fln Alignment:

biogeco3_mira_c18214___MEMIVKATTITILLPVILCCIPCGESGSRGRSLAQRLPALGVDYGQTADNLPPPSAVAKLVQSTSISKLRLYGADPAILQAFANTGIGLVVGIGNDQIPSLNQLAVAQNWIKNN
A9NX81__________________MEMRVKAVTITILLPVILYCIPCGESGGRGKSLVQRSPALGVDYGKTADNLPPPSAVAKMVQNTTISKLRLYEADPAILQAFANTGIGLVVGIGNDQIPSLSQLTVAQNWIKNN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
207	33	66			0.997464
208	33		66		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain