SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20422

Length: 436 nt

UniGene Fasta

>biog3_v1.0_unigene20422
AATGTAGATTTCAAGGGTGAAAATGGAGAGGAGGCCAGACACAGGCGTGGATAGCAGTCCATTGTTGGAAAGCGGCAACACTAATAATGAGGCTCGAGGGACAGTTTTCCAAAGTGTCGCGCGATTCATTCGCAGGGCGGTGGCAGAAGAATGATGAGAGAGCCGTCGATGTTGGTGCGCGAAAACGCGGCGCAGCAATTGGAAGAACGGCAGAGCGATTGGGCGTATTCCAAGCCCGTGATCATATTGGACATCCTGTGGAACCTGTCGTTTGTGGTCGTTTCGGTCGTGATTTTATCGTCGTCCTTGGACGAAAGGCCCACGACGCCCTTGAGGATTTGGATTGTAGGCTACGCCCTGCAGTGCATCTTACATATGATTTACGTGGCTTATGAATATATGAGGCGGTATCGGCAACGTTTGCCTTCGGTTGTCA

Ace file of the UniGene biog3_v1.0_unigene20422

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2918	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase [Arabidopsis thaliana] sp\|Q93Z92.1\|RING4_ARATH RecName: Full=E3 ubiquitin-protein ligase At4g11680; AltName: Full=RING finger protein At4g11680 gb\|AAL15343.1\| AT4g11680/T5C23_110 [Arabidopsis thaliana] gb\|AAR23720.1\| At4g11680/	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase-like	IPR001279	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	RNA-metabolising metallo-beta-lactamase	IPR011108	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNE7

Fln msg: Separated hits, possible frame ERROR between 115 and 133, Distance to subject end: 234 aas, your sequence is shorter than subject: 138 - 373

Fln protein: MERRPDTGVDSSPLLESGNTNNEARGTVFQxxxxxxxQGGGRRMMREPSMLVRENAAQQLEERQSDWAYSKPVIILDILWNLSFVVVSVVILSSSLDERPTTPLRIWIVGYALQCILHMIYVAYEYMRRYRQRLPSVV

Protein Length: 139

Fln nts: AATGTAGATTTCAAGGGTGAAA_-_ATGGAGAGGAGGCCAGACACAGGCGTGGATAGCAGTCCATTGTTGGAAAGCGGCAACACTAATAATGAGGCTCGAGGGACAGTTTTCCAAAGxxxxxxxxxxxxxxxxxxGCAGGGCGGTGGCAGAAGAATGATGAGAGAGCCGTCGATGTTGGTGCGCGAAAACGCGGCGCAGCAATTGGAAGAACGGCAGAGCGATTGGGCGTATTCCAAGCCCGTGATCATATTGGACATCCTGTGGAACCTGTCGTTTGTGGTCGTTTCGGTCGTGATTTTATCGTCGTCCTTGGACGAAAGGCCCACGACGCCCTTGAGGATTTGGATTGTAGGCTACGCCCTGCAGTGCATCTTACATATGATTTACGTGGCTTATGAATATATGAGGCGGTATCGGCAACGTTTGCCTTCGGTTGTCA

Fln Alignment:

biogeco3_mira_c18178___MER-RPDTGVDSSPLLESGNTNNEARGTVFQSxxxxxxQGGGRRMMREPSMLVRENAAQQLEERQSDWAYSKPVIILDILWNXXXXXXXXXXXXXXXDERPTTPLRIWIVGYALQCILHMIYVAYEYMRRYRQRLPSV
B8LNE7__________________MERTRPDTGVDSSPLLESGTTNNEARGSAYQSxxxxxxRAGGRRMMREPSMMVRENAAQQLEERQSDWAYSKPVVMLDLLWNLSFVVVSVVILTSTLEERPTTPLRVWIAGYALQCLLHMIYVAYEYTRRNRQRSPSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain