SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20409

Length: 304 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20409
AATGTGAGACCATTACGTGTAACTGATGATTAGTCAGCAATGGTTCTGCGAAGTATTTTGATTACCTATTCTATGTTGATTTTGAAGCTTCAATGGCTGATGCCCAGGCACAAAATGCCCTGGGGCACTTGCAGGCAGATCCACGCAAAGGGATCACTTCCATCCGGCTCAACAACGGAGCCTTACCACAAGGGTGTCGAGAGAATTGAACCCGTGACCTCTCTAATTAGCAAAGGAGTTTGCGACATTCATTAGAGTACTTGGAAGCTACCCAATGGATGTGAGCCCAAGTGACTGACACATT

Ace file of the UniGene biog3_v1.0_unigene20409 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene65127	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arogenate dehydratase 1 [Arabidopsis thaliana] sp\|Q9SA96.1\|AROD1_ARATH RecName: Full=Arogenate dehydratase/prephenate dehydratase 1, chloroplastic; Short=AtADT1; Short=AtPDT1; Flags: Precursor gb\|AAD30242.1\|AC007296_3 Similar to gi\|2392772 T32N15.11 putat	-	-	2.0e-23	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	arogenate dehydratase prephenate dehydratase chloroplastic-like	-	-	5.25777e-34	51%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lyases, Carbon-oxygen lyases, Hydro-lyases.	EC:4.2.1.-	-	5.25777e-34	51%

Source	KEGGs	Term	e value	Identity
Blast2go	Pentose and glucuronate interconversions	00040	5.25777e-34	51%
Blast2go	Fatty acid biosynthesis	00061	5.25777e-34	51%
Blast2go	Secondary bile acid biosynthesis	00121	5.25777e-34	51%
Blast2go	Tetracycline biosynthesis	00253	5.25777e-34	51%
Blast2go	Tyrosine metabolism	00350	5.25777e-34	51%
Blast2go	Benzoate degradation	00362	5.25777e-34	51%
Blast2go	Bisphenol degradation	00363	5.25777e-34	51%
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	5.25777e-34	51%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	5.25777e-34	51%
Blast2go	Toluene degradation	00623	5.25777e-34	51%
Blast2go	Naphthalene degradation	00626	5.25777e-34	51%
Blast2go	Butanoate metabolism	00650	5.25777e-34	51%
Blast2go	Porphyrin and chlorophyll metabolism	00860	5.25777e-34	51%
Blast2go	Limonene and pinene degradation	00903	5.25777e-34	51%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	5.25777e-34	51%
Blast2go	Biosynthesis of type II polyketide backbone	01056	5.25777e-34	51%
Blast2go	Biosynthesis of type II polyketide products	01057	5.25777e-34	51%
Blast2go	Metabolic pathways	01100	5.25777e-34	51%
Blast2go	Biosynthesis of secondary metabolites	01110	5.25777e-34	51%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydro-lyase activity	GO:0016836	Molecular Function	5.25777e-34	51%

Source	InterPros	Term	Type	Identity
Sma3	Prephenate dehydratase	IPR001086	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Prephenate dehydratase, conserved site	IPR018528	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ85

Fln msg: Separated hits, possible frame ERROR between 134 and 233, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 99 - 402

Fln protein: CETITCN**LVSNGSAKYFDYLFYVDFEASMADAQAQNALGHLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEFATFIRVLGSYPMDVSPSD*

Protein Length: 100

Fln nts: AATGTGAGACCATTACGTGTAACTGATGATTAGTCAGCAATGGTTCTGCGAAGTATTTTGATTACCTATTCTATGTTGATTTTGAAGCTTCAATGGCTGATGCCCAGGCACAAAATGCCCTGGGGCACTTGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAAGGAGTTTGCGACATTCATTAGAGTACTTGGAAGCTACCCAATGGATGTGAGCCCAAGTGA___CTGACACATT

Fln Alignment:

biogeco3_mira_c18161___SNGSAKYFDYLFYVDFEASMADAQAQNALGHLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEFATFIRVLGSYPMDVSPS
B8LQ85__________________NTGAAKYFDYLFYIDFEASMADPRAQNALGHLQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQEFATFMRVLGSYPMDMTPT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain