SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20366

Length: 300 nt

UniGene Fasta

>biog3_v1.0_unigene20366
AATGTCTCTTCTAATATTCCTTCTGGTTCCAGAAAATGAACGGGAAGCAAGCCGGGCATCTTACTTAAGAAAGCATCCAGAAGCATTTTGGGTTGACTTTGGGGATTTCCAGTTTGTGCGTATTGAACCAAAGTGTGTAAGATATGTTTCTGGTGTTGCAACAGCCATGCTAGGATCAGGAGACTTCACCGTTGAAGAATATAAAAAGGCAAAAGTTGATCCAATATCCCAGTTTTCAATCCCTGTAGCGTCCCATATGAACAGAGATCATGCAGAAGACACAAAATTGATTGTACAACA

Ace file of the UniGene biog3_v1.0_unigene20366

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4146	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Root border cell-specific protein n=1 Tax=Pisum sativum RepID=Q9M7D2_PEA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	79%
Blast2go	fmn binding protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	FMN binding	GO:0010181	Molecular Function	0.0	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain	IPR011576	-	-
Sma3	FMN-binding split barrel	IPR012349	-	-
Sma3	Haem iron utilisation protein, pyridoxamine 5'-phosphate domain-type	IPR014599	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C6TD66

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 99 - 326

Fln protein: MSLLIFLLVPENEREASRASYLRKHPEAFWVDFGDFQFVRIEPKCVRYVSGVATAMLGSGDFTVEEYKKAKVDPISQFSIPVASHMNRDHAEDTKLIVQ

Protein Length: 100

Fln nts: AATGTCTCTTCTAATATTCCTTCTGGTTCCAGAAAATGAACGGGAAGCAAGCCGGGCATCTTACTTAAGAAAGCATCCAGAAGCATTTTGGGTTGACTTTGGGGATTTCCAGTTTGTGCGTATTGAACCAAAGTGTGTAAGATATGTTTCTGGTGTTGCAACAGCCATGCTAGGATCAGGAGACTTCACCGTTGAAGAATATAAAAAGGCAAAAGTTGATCCAATATCCCAGTTTTCAATCCCTGTAGCGTCCCATATGAACAGAGATCATGCAGAAGACACAAAATTGATTGTACAACA

Fln Alignment:

biogeco3_mira_c18097___VPENEREASRASYLRKHPEAFWVDFGDFQFVRIEPKCVRYVSGVATAMLGSGDFTVEEYKKAKVDPISQFSIPVASHMNRDHAEDTKLIVQ
C6TD66__________________VPENEREAVRAAYLARHPNAFWVDFGDFQFLRIEPKVVRFVSGVATALLGSGEFSGDEYKSAKVDPIAQFSKPVASHMNKDHAEDNKVIVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain