SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20347

Length: 452 nt

UniGene Fasta

>biog3_v1.0_unigene20347
AATGTCTTGTGATTATGTATGGGAAGTGCGGCAGTGTTTTGGATGCTCGCCGCTATTTGGACAACATGCCAGAGCAGAATGTAGTCTCATGGAATTCTATGATTTCAGCTTATGCTAAGCATGGAAATGGCTGTGAAGAGGCTTTGAAGATGTTTAGCCAAATGCAGAACAATACCTCATTCCAGCCGAACCAGTTCACTTTTGCTGGTGTTCTCGCGGCCTGTGCTGATTTGAAAGCCCTGGATCATGGCAGGGAGATTCACGGGGACATAATTCGGACTGGGTTACAATCTAATGCTTGTGTGGGAACTGCCCTCGTAGTTGTGTATGGCAAATGTGGGTATATTGAGAGTGCACGAAAATTATTTGACAGAATGCCTNACCGTGATGTGGTCACATGGAATGCTATGATTACAGGATATATGCAGAATAACAGCGTTGATGAGGCTGTC

Ace file of the UniGene biog3_v1.0_unigene20347

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene55099	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01535, PPR, PPR repeat	-	-	5.0e-07	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	pentatricopeptide repeat-containing protein at2g34400-like	-	-	4.26695e-42	66%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 170 aas, your sequence is shorter than subject: 150 - 644

Fln protein: CLVIMYGKCGSVLDARRYLDNMPEQNVVSWNSMISAYAKHGNGCEEALKMFSQMQNNTSFQPNQFTFAGVLAACADLKALDHGREIHGDIIRTGLQSNACVGTALVVVYGKCGYIESARKLFDRMPNRDVVTWNAMITGYMQNNSVDEAV

Protein Length: 151

Fln nts: AATGTCTTGTGATTATGTATGGGAAGTGCGGCAGTGTTTTGGATGCTCGCCGCTATTTGGACAACATGCCAGAGCAGAATGTAGTCTCATGGAATTCTATGATTTCAGCTTATGCTAAGCATGGAAATGGCTGTGAAGAGGCTTTGAAGATGTTTAGCCAAATGCAGAACAATACCTCATTCCAGCCGAACCAGTTCACTTTTGCTGGTGTTCTCGCGGCCTGTGCTGATTTGAAAGCCCTGGATCATGGCAGGGAGATTCACGGGGACATAATTCGGACTGGGTTACAATCTAATGCTTGTGTGGGAACTGCCCTCGTAGTTGTGTATGGCAAATGTGGGTATATTGAGAGTGCACGAAAATTATTTGACAGAATGCCTaACCGTGATGTGGTCACATGGAATGCTATGATTACAGGATATATGCAGAATAACAGCGTTGATGAGGCTGTC

Fln Alignment:

biogeco3_mira_c18067___LVIMYGKCGSVLDARRYLDNMPEQNVVSWNSMISAYAKHGNGCEEALKMFSQMQNNTSFQPNQFTFAGVLAACADLKALDHGREIHGDIIRTGLQSNACVGTALVVVYGKCGYIESARKLFDRMPNRDVVTWNAMITGYMQNNSVDEAV
B8LLJ0__________________LVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHG-QEALGFFYEMQD-VGIQPNHFTFASILPACTDLEVLG---EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain