SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20346

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene20346
TAGAGAATCTGTGGCAATAGACTTTCTGCCAGTCCTCCGTTCTGGATTCTGGTCTGATATAGGAGGTCGTGAAAACATGGAAGATGCGCATGTATGCATTCCTGATCTTGCCAAAACATATGGCCAGAGTTCCTTCGTTCAAAGTCCTGTTGCCTTCTATGGGGTGTTTGATGGACATGAAGGAAAAGCTGCAGCCCATTTTGTTCGCGACAATCTACCCAGACTCATTGTTGAGAATCCTGA

Ace file of the UniGene biog3_v1.0_unigene20346

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4210	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2C [Mesembryanthemum crystallinum]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein phosphatase 2c	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	74%
Blast2go	binding	GO:0005488	Molecular Function	74%
Blast2go	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA0

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 80 - 397

Fln protein: RESVAIDFLPVLRSGFWSDIGGRENMEDAHVCIPDLAKTYGQSSFVQSPVAFYGVFDGHEGKAAAHFVRDNLPRLIVENP

Protein Length: 81

Fln nts: TAGAGAATCTGTGGCAATAGACTTTCTGCCAGTCCTCCGTTCTGGATTCTGGTCTGATATAGGAGGTCGTGAAAACATGGAAGATGCGCATGTATGCATTCCTGATCTTGCCAAAACATATGGCCAGAGTTCCTTCGTTCAAAGTCCTGTTGCCTTCTATGGGGTGTTTGATGGACATGAAGGAAAAGCTGCAGCCCATTTTGTTCGCGACAATCTACCCAGACTCATTGTTGAGAATCCTGA

Fln Alignment:

biogeco3_mira_c18066___RESVAIDFLPVLRSGFWSDIGGRENMEDAHVCIPDLAKTYGQSSFVQSPVAFYGVFDGHEGKAAAHFVRDNLPRLIVEN
B8LQA0__________________RENVATNFIPVLRSGGWADIGDRDCMEDTHICIDSFVDKFGFPPIEEGPGAFYGVFDGHGGKHAAQFACDRLPSLIVKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain