SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20344

Length: 355 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20344
AATGTATAATTTGCTTCTCATGTCAGAGCTGGCACAAGTGAAGAAACAGTGCAACGATCTCCTCCTGTTTCTGTCAAAGTGTGTAAACATTACCCCGGACAACCTCAAAAATATCTTGATAGCCGCTTCTCAAACGAATTGCCGCGATGAAAACCTGAAGGCGTTGCCGCTGGACGCGTCCACACTGGCCAAGTTAGCCAATAAAAGTGTTTTCTCTGAAAATCACGAGAAAAAAAAGGCCGCCTAATATTTTAACGGAGCTCTGTCGAAGCAATGTTAAAGACTCAGACACCGCTGCAAAGAGCACCGGTGGAAGAGAAGCGAATTCTGACGGTCACGAAAACGATAACACATT

Ace file of the UniGene biog3_v1.0_unigene20344 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4772	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock factor protein 7 n=1 Tax=Zea mays RepID=B6TJ68_MAIZE	-	-	52%
FL-Next	sp=Heat shock factor protein HSF24; Solanum peruvianum (Peruvian tomato) (Lycopersicon peruvianum).	-	-	34%
Blast2go	heat shock factor protein 7	-	-	67%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P22335

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 82 - 301

Fln protein: MYNLLLMSELAQVKKQCNDLLLFLSKCVNITPDNLKNILIAASQTNCRDENLKALPLDASTLAKLANKSVFSENHEKKKAA*

Protein Length: 83

Fln nts: AATGTATAATTTGCTTCTCATGTCAGAGCTGGCACAAGTGAAGAAACAGTGCAACGATCTCCTCCTGTTTCTGTCAAAGTGTGTAAACATTACCCCGGACAACCTCAAAAATATCTTGATAGCCGCTTCTCAAACGAATTGCCGCGATGAAAACCTGAAGGCGTTGCCGCTGGACGCGTCCACACTGGCCAAGTTAGCCAATAAAAGTGTTTTCTCTGAAAATCACGAGAAAAAAAAGGCCGCCTAATATTTTAACGGAGCTCTGTCGAAGCAATGTTAAAGACTCAGACACCGCTGCAAAGAGCACCGGTGGAAGAGAAGCGAATTCTGACGGTCACGAAAACGATAACACATT

Fln Alignment:

biogeco3_mira_c18063___NLLLMSELAQVKKQCNDLLLFLSKCVNITPDNLKNILIAASQTNCRDENLKALPLDASTLAKLANKSVFSENHEKK
P22335__________________NQMLSSELVQAKKQCNELVAFLSQYVKVAPDMINRIM---SQGTPSGSSLEELVKEVGGVKDLEEQGSYNDNDDKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain