SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20322

Length: 217 nt

UniGene Fasta

>biog3_v1.0_unigene20322
AATGTTGAAGAGGAGTCCCAGAAGCAGACGCTGTTGAATCCATTTGGCAACAGCAACGGTAACGCATCTCGGCAAAAGGTTCTGAAACCAAACCCAGAGGCTTTGATGAAGAGACTGTAGCCTCTTTTAGCCGATGTCTGCAACTGGATATCCAAATGGAAGAGAGAATTTGGGGAAACTTAACAGAGGATCTTATTAGTGAAGTCCTTGCAAGGGT

Ace file of the UniGene biog3_v1.0_unigene20322

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20599	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein n=2 Tax=Populus trichocarpa RepID=B9N7N7_POPTR	-	-	2.0e-07	51%
FL-Next	sp=F-box/kelch-repeat protein At5g15710; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	f-box kelch-repeat protein	-	-	2.82619e-09	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LFV5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 329 aas, your sequence is shorter than subject: 71 - 448

Fln protein: C*RGVPEADAVESIWQQQR*RISAKGSETKPRGFDEETVASFSRCLQLDIQMEERIWGNLTEDLISEVLAR

Protein Length: 72

Fln nts: AATGTTGAAGAGGAGTCCCAGAAGCAGACGCTGTTGAATCCATTTGGCAACAGCAACGGTAACGCATCTCGGCAAAAGGTTCTGAAACCAAACCCAGAGGCTTTGATGAAGAGACTGTAGCCTCTTTTAGCCGATGTCTGCAACTGGATATCCAAATGGAAGAGAGAATTTGGGGAAACTTAACAGAGGATCTTATTAGTGAAGTCCTTGCAAGGGT

Fln Alignment:

biogeco3_mira_c18031___ETKPRGFDEETVASFSRCLQLDIQMEERIWGNLTEDLISEVLAR
Q9LFV5__________________KTKPRGLEEETVASFGKQVVADVQMEDGIWAMLPEDLLNEILAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain