SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20319

Length: 228 nt

UniGene Fasta

>biog3_v1.0_unigene20319
AATGTATGTCGGAATACCATCTTTGGGATTTCATACTCCTCTGCAAGCTGCACACACCCCCATTCTGGATGCTCTGGCTTGTGCTGGAGTCAGTGGACTCATGGATCCAGTGGAACCGGGCTTGGCATGTGGAAGTGACACTGCCCATCTTTCTTTACTGGGTTATGATCCGAGGATTTACTACAGAGGCAGGGGTGCATTTGAATCAATGGGAGCAGGTCTTGACAT

Ace file of the UniGene biog3_v1.0_unigene20319

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene843	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cofactor-independent phosphoglycerate mutase [Arabidopsis thaliana] dbj\|BAB02608.1\| phosphonopyruvate decarboxylase-like protein [Arabidopsis thaliana] gb\|AAL60005.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20273.1\| unknown protein [Arabidopsis thali	-	-	68%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	83%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglycerate mutase.	EC:5.4.2.1	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	84%
Blast2go	Methane metabolism	00680	84%
Blast2go	Biosynthesis of phenylpropanoids	01061	84%
Blast2go	Biosynthesis of terpenoids and steroids	01062	84%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	84%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	84%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	84%
Blast2go	metal ion binding	GO:0046872	Molecular Function	84%
Blast2go	phosphoglycerate mutase activity	GO:0004619	Molecular Function	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bisphosphoglycerate-independent phosphoglycerate mutase	IPR004456	-	0.0	-
Sma3	Metalloenzyme	IPR006124	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9S3E7

Fln msg: Distance to subject end: 399 aas, your sequence is shorter than subject: 75 - 493

Fln protein: MYVGIPSLGFHTPLQAAHTPILDALACAGVSGLMDPVEPGLACGSDTAHLSLLGYDPRIYYRGRGAFESMGAGLD

Protein Length: 76

Fln nts: AATGTATGTCGGAATACCATCTTTGGGATTTCATACTCCTCTGCAAGCTGCACACACCCCCATTCTGGATGCTCTGGCTTGTGCTGGAGTCAGTGGACTCATGGATCCAGTGGAACCGGGCTTGGCATGTGGAAGTGACACTGCCCATCTTTCTTTACTGGGTTATGATCCGAGGATTTACTACAGAGGCAGGGGTGCATTTGAATCAATGGGAGCAGGTCTTGACAT

Fln Alignment:

biogeco3_mira_c18028___VGIPSLGFHTPLQAAHTPILDALACAGVSGLMDPVEPGLACGSDTAHLSLLGYDPRIYYRGRGAFESMGAGL
A9S3E7__________________VGIPSLGFKSPVEAAKTPNLDALASGGISGLMDPVEPGLGCGSDTAHLSLLGYNPRIYYRGRGAFESLGAGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain