SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20297

Length: 301 nt

UniGene Fasta

>biog3_v1.0_unigene20297
AATGTAGTGATGAGGAATTTGAGGAGGAAAAGCAAGAGGATGATAGGGGTGCAGAGGTGAAAAGGGGCAGATCGTGGGTATTGTCGTCGAGCTCAAGCGGAGGTGAGTCATTTGTGTCGTCAACAGAGAAGGCCGTCTATACCGTTTCCAAGGATGGGAAATTCAAGGTTCGGTTCGATTCTTGGATTAAAGGGAATATGCTCGGGCGGGGATCATTTGGAACTGTTTACGAGGGAATTAGCGATACTGGATTCTTCTTTGCAGTTAAGGAGGTTTCTCTTGTAGAGCAAGGTCTTGGTGC

Ace file of the UniGene biog3_v1.0_unigene20297

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1231	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative mitogen-activated protein kinase 1 [Medicago sativa]	-	-	63%
FL-Next	sp=Mitogen-activated protein kinase kinase kinase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	mitogen-activated protein kinase kinase kinase 1-like	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	65%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39008

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 99 - 608

Fln protein: CSDEEFEEEKQEDDRGAEVKRGRSWVLSSSSSGGESFVSSTEKAVYTVSKDGKFKVRFDSWIKGNMLGRGSFGTVYEGISDTGFFFAVKEVSLVEQGLG

Protein Length: 100

Fln nts: AATGTAGTGATGAGGAATTTGAGGAGGAAAAGCAAGAGGATGATAGGGGTGCAGAGGTGAAAAGGGGCAGATCGTGGGTATTGTCGTCGAGCTCAAGCGGAGGTGAGTCATTTGTGTCGTCAACAGAGAAGGCCGTCTATACCGTTTCCAAGGATGGGAAATTCAAGGTTCGGTTCGATTCTTGGATTAAAGGGAATATGCTCGGGCGGGGATCATTTGGAACTGTTTACGAGGGAATTAGCGATACTGGATTCTTCTTTGCAGTTAAGGAGGTTTCTCTTGTAGAGCAAGGTCTTGGTGC

Fln Alignment:

biogeco3_mira_c17992___SWIKGNMLGRGSFGTVYEGISDTGFFFAVKEVSLVEQG
Q39008__________________SWQKGQLLGRGSFGSVYEGISGDGDFFAVKEVSLLDQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain