SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20296

Length: 535 nt

UniGene Fasta

>biog3_v1.0_unigene20296
AATGTTACTCGTAATCATGCTTTGTCACTGATGACTGCTCTTGGAAGGCTGCTTCCTGATCAAGTGTTGGATCACGTTATAGATATATTTACTATTATGGGTAAATCAACTATAATTCAGGATGATAGCCATTCACAAAAGGTCTCTGAACAGCTGATATCAGCAGTGGTTCCATGCTGGTTAATGACTACTAAAGATCCTAAAAAGTTGTTGAAGGTTTTCGTCAATGCATTGCCACAAATGTCACAGCATCGCAGATTGGCTATCATGAAACATCTGCTAGGGGTTGTAGGTGAAGAAGCAAGCTTGCCTGTCCTTCTGTTATTACTAATTGAGATGATGGTTTCAAGAACTTTAATATCCTCTCAGAAAGCACAAAATCTTGAAGGCACACCGTTGGATTCAAAGTGGGAAATTGAGTTTTCTGTACAACTGAGTGGGCAATACACATCTAGAATATGGCTTCCAGCTTTAGTTAAGCTTTTGCAAGGAGCAAAGACAGATGCATATATCCTGGACCTACTTCAACCACATT

Ace file of the UniGene biog3_v1.0_unigene20296

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41212	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Uncharacterized protein At3g06530; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	u3 small nucleolar rna-associated protein 10 and nuc211 domain-containing protein	-	-	1.57163e-40	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.57163e-40	63%
Blast2go	vacuole	GO:0005773	Cellular Component	1.57163e-40	63%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.57163e-40	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	BP28, C-terminal domain	IPR012954	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C8Z4

Fln msg: Distance to subject end: 521 aas, your sequence is shorter than subject: 178 - 2001

Fln protein: NVTRNHALSLMTALGRLLPDQVLDHVIDIFTIMGKSTIIQDDSHSQKVSEQLISAVVPCWLMTTKDPKKLLKVFVNALPQMSQHRRLAIMKHLLGVVGEEASLPVLLLLLIEMMVSRTLISSQKAQNLEGTPLDSKWEIEFSVQLSGQYTSRIWLPALVKLLQGAKTDAYILDLLQPH

Protein Length: 179

Fln nts: AATGTTACTCGTAATCATGCTTTGTCACTGATGACTGCTCTTGGAAGGCTGCTTCCTGATCAAGTGTTGGATCACGTTATAGATATATTTACTATTATGGGTAAATCAACTATAATTCAGGATGATAGCCATTCACAAAAGGTCTCTGAACAGCTGATATCAGCAGTGGTTCCATGCTGGTTAATGACTACTAAAGATCCTAAAAAGTTGTTGAAGGTTTTCGTCAATGCATTGCCACAAATGTCACAGCATCGCAGATTGGCTATCATGAAACATCTGCTAGGGGTTGTAGGTGAAGAAGCAAGCTTGCCTGTCCTTCTGTTATTACTAATTGAGATGATGGTTTCAAGAACTTTAATATCCTCTCAGAAAGCACAAAATCTTGAAGGCACACCGTTGGATTCAAAGTGGGAAATTGAGTTTTCTGTACAACTGAGTGGGCAATACACATCTAGAATATGGCTTCCAGCTTTAGTTAAGCTTTTGCAAGGAGCAAAGACAGATGCATATATCCTGGACCTACTTCAACCACATT

Fln Alignment:

biogeco3_mira_c17988___VTRNHALSLMTALGRLLPDQVLDHVIDIFTIMGKSTIIQDDSHSQKVSEQLISAVVPCWLMTTKDPKKLLKVFVNALPQMSQHRRLAIMKHLLGV
Q9C8Z4__________________VTRNHIFSLFTAIVKFVPDKVLDHIISILTLVGESTVTQIDSHSKSIFEGFISMVIPFWLSKTKSEEQLLQIFVKVLPDIVEHRRRSIVAYLLGM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain