SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20256

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20256
GAACGCCAGTCTGGAGCAGCGGATTTTCGATTTCATGCAATCTTCTGGGAAGCCCAACGATTTCCCAACGAAGGATGAGTTGCTGAAGGCGGGACACCCTGATTTGGTGAATGCCATAATTGCCCACGGTGGCTGGCTAGCTGCCGGCTGGGATGTTGAGGAACTTTCCCACAGTGATTCTTCTAATGAAGATGAGGAAGAGTGCATTGCTTTGGAGGAGGAAGAAGAATATTGCGAGAATGGGGAACTTCAGAAGCCCTCTTTTCAAAACCCCATAGATGTGAGCGCCGACGAGGTGGCCGAGGTGCATGTGGATACCGGGGATGGAGATGAAAGTGGCATAGCTGGGATGCTGAGCAGGCTTGAAAGGGAAAGATCGCGGTTCTACAGTGAGGTTTCGACATT

Ace file of the UniGene biog3_v1.0_unigene20256 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2868	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana] gb\|AAF79876.1\|AC000348_29 T7N9.13 [Arabidopsis thaliana] gb\|AEE30776.1\| 5'-AMP-activated protein kinase-like protein [Arabidopsis thaliana]	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	5 -amp-activated protein kinase subunit beta-2	-	-	56%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AED6

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 134 - 294

Fln protein: NASLEQRIFDFMQSSGKPNDFPTKDELLKAGHPDLVNAIIAHGGWLAAGWDVEELSHSDSSNEDEEECIALEEEEEYCENGELQKPSFQNPIDVSADEVAEVHVDTGDGDESGIAGMLSRLERERSRFYSEVST

Protein Length: 135

Fln nts: GAACGCCAGTCTGGAGCAGCGGATTTTCGATTTCATGCAATCTTCTGGGAAGCCCAACGATTTCCCAACGAAGGATGAGTTGCTGAAGGCGGGACACCCTGATTTGGTGAATGCCATAATTGCCCACGGTGGCTGGCTAGCTGCCGGCTGGGATGTTGAGGAACTTTCCCACAGTGATTCTTCTAATGAAGATGAGGAAGAGTGCATTGCTTTGGAGGAGGAAGAAGAATATTGCGAGAATGGGGAACTTCAGAAGCCCTCTTTTCAAAACCCCATAGATGTGAGCGCCGACGAGGTGGCCGAGGTGCATGTGGATACCGGGGATGGAGATGAAAGTGGCATAGCTGGGATGCTGAGCAGGCTTGAAAGGGAAAGATCGCGGTTCTACAGTGAGGTTTCGACATT

Fln Alignment:

biogeco3_mira_c17925___NASLEQRIFDFMQSSGKPNDFPTKDELLKAGHPDLVNAIIAHGGWLAAGWDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELQKPSFQNPIDVSADEVAEVHVDTGDGDESGIAGMLSRLERERSRFYSEVS
D5AED6__________________NASLEQRVFDFMQSSEKPNDFPTKDELLKAGHSDLVNAIIAHGGWLTAGWDFEELLPINSSNDDEEECIALEEEEDNCEDGEFQKPYFQNPIDVSAEEVVEIPLETGDGDESGIAGMLNRLEKERSRFYSEAS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain