SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20247

Length: 223 nt

UniGene Fasta

>biog3_v1.0_unigene20247
TCGATGAAACATTTATGGATTATCTTTGTACATTCGATGTTTTAGTTATATCATCTGGCCACTGGTTTCAAAAAAGGCAGCTTTTCTATACAAAGACAATGTCGTGGGTGGACAGCTATGGTGGGAAAAAGGCCACAAACGCAAAATTGAAAATGCTGAAGCATTTGCTATTGCCACAGAAACTGCGTTGAAAGGCGTTGTTTCCCATCCAGATTACAAGGGA

Ace file of the UniGene biog3_v1.0_unigene20247

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2028	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein trichome birefringence-like 18 [Arabidopsis thaliana] ref\|NP_001031712.1\| protein trichome birefringence-like 18 [Arabidopsis thaliana] gb\|AAL49815.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91693.1\| unknown protein [Arabidopsis thaliana] gb\|	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	67%
Blast2go	protein trichome birefringence-like 18	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf senescence	GO:0010150	Biological Process	0.0	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	0.0	-
Sma3		IPR004253	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C0P5R2

Fln msg: Overlapping hits, possible frame ERROR between 86 and 68, Distance to subject end: 135 aas, your sequence is shorter than subject: 74 - 500

Fln protein: DETFMDYLCTFDVLVISSGHWxxxxxxxxYKDNVVGGQLWWEKGHKRKIENAEAFAIATETALKGVVSHPDYKG

Protein Length: 75

Fln nts: TCGATGAAACATTTATGGATTATCTTTGTACATTCGATGTTTTAGTTATATCATCTGGCCACTGGxxxxxxxxxxxxxxxxxxxxxxxxTACAAAGACAATGTCGTGGGTGGACAGCTATGGTGGGAAAAAGGCCACAAACGCAAAATTGAAAATGCTGAAGCATTTGCTATTGCCACAGAAACTGCGTTGAAAGGCGTTGTTTCCCATCCAGATTACAAGGGA

Fln Alignment:

biogeco3_mira_c17908___DETFMDYLCTFDVLVISSGHWFxxxxxxLYKDNVVGGQLWW-EKGHKRKIENAEAFAIATETALKGVVSHPDYKG
C0P5R2__________________DETFMEFLPRFDVLVLSSGHWFxxxxxxILNENVVGGQLWWPRKAGKMQVNNVDAFGISVETCLTAVVNNPNFTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain