SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20241

Length: 235 nt

UniGene Fasta

>biog3_v1.0_unigene20241
AATGTTCTTTTTATTCCAAGTGGCTTTTCCAATTGAGATGTGGCTTTGGACTTCTCATGTATGGGTTTGGATCAAAAAAGAAATTGCTTGAAGACTTTGCTTCCTCAACTTTGACTGATGGTGGAGTAGTTGTGATAAATGGATACCTTCCATCTGTCAATATGAAAAGTGTTATATCTACTATTGCTGAAGTCTTATTGGATCAAGTAGACAACATGTCTGCAAGAAACAAGTC

Ace file of the UniGene biog3_v1.0_unigene20241

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene400	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Plant origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9SP26_RICCO	-	-	60%
FL-Next	sp=Origin recognition complex subunit 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	origin recognition complex subunit 2	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	chromatin silencing at silent mating-type cassette	GO:0030466	Biological Process	73%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	73%
Blast2go	pre-replicative complex assembly	GO:0006267	Biological Process	73%
Blast2go	identical protein binding	GO:0042802	Molecular Function	73%
Blast2go	DNA replication origin binding	GO:0003688	Molecular Function	73%
Blast2go	nuclear origin of replication recognition complex	GO:0005664	Cellular Component	73%
Blast2go	pre-replicative complex	GO:0005656	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Glutamate/acetylglutamate kinase	IPR001057	-	-
Sma3	Ribosomal protein S2	IPR001865	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ribosomal protein S2, eukaryotic/archaeal	IPR005707	-	-
Sma3	Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase	IPR005715	-	-
Sma3	Origin recognition complex, subunit 2	IPR007220	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q38899

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 77 - 363

Fln protein: CSFYSKWLFQLRCGFGLLMYGFGSKKKLLEDFASSTLTDGGVVVINGYLPSVNMKSVISTIAEVLLDQVDNMSARNK

Protein Length: 78

Fln nts: AATGTTCTTTTTATTCCAAGTGGCTTTTCCAATTGAGATGTGGCTTTGGACTTCTCATGTATGGGTTTGGATCAAAAAAGAAATTGCTTGAAGACTTTGCTTCCTCAACTTTGACTGATGGTGGAGTAGTTGTGATAAATGGATACCTTCCATCTGTCAATATGAAAAGTGTTATATCTACTATTGCTGAAGTCTTATTGGATCAAGTAGACAACATGTCTGCAAGAAACAAGTC

Fln Alignment:

biogeco3_mira_c17899___SFYSKWLFQLRCGFGLLMYGFGSKKKLLEDFASSTLTDGGVVVINGYLPSVNMKSVISTIAEVL
Q38899__________________TMYSKWVFELRCGFGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQVLLALAELL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain