SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20202

Length: 225 nt

UniGene Fasta

>biog3_v1.0_unigene20202
AATGTATTGGAAGCAGAAGCACTGCCCACATTGGTTCATTTCATGTATCTCAGTTATCGGTTGTGCTGCATGGTCGATTGAAGGCCAACGCAAGTAACACAAACCCAAGGAACTCCTATCTCTTCCTCACACATCTCAAAGCGTCCATGGAAGATGTTCAAGAGACATATATAATGATCAAACCTGATGGAGTTCAGCGAGGACTGGTGGGGGAAATAATTTCCC

Ace file of the UniGene biog3_v1.0_unigene20202

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25282	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoside diphosphate kinase n=1 Tax=Ricinus communis RepID=B9RAM1_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	nucleoside diphosphate kinase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	85%
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	85%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	85%
Blast2go	nucleoside diphosphate phosphorylation	GO:0006165	Biological Process	85%
Blast2go	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	85%
Blast2go	identical protein binding	GO:0042802	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	thylakoid	GO:0009579	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside diphosphate kinase	IPR001564	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEB8

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 74 - 268

Fln protein: CIGSRSTAHIGSFHVSQLSVVLHGRLKANASNTNPRNSYLFLTHLKASMEDVQETYIMIKPDGVQRGLVGEIIS

Protein Length: 75

Fln nts: AATGTATTGGAAGCAGAAGCACTGCCCACATTGGTTCATTTCATGTATCTCAGTTATCGGTTGTGCTGCATGGTCGATTGAAGGCCAACGCAAGTAACACAAACCCAAGGAACTCCTATCTCTTCCTCACACATCTCAAAGCGTCCATGGAAGATGTTCAAGAGACATATATAATGATCAAACCTGATGGAGTTCAGCGAGGACTGGTGGGGGAAATAATTTCCC

Fln Alignment:

biogeco3_mira_c17850___IGSRSTAHIGSFHVSQLSVVLHGRL---KANASNTNPRNSYLFLTHLKASMEDVQETYIMIKPDGVQRGLVGEIIS
D5AEB8__________________IGRKNTTHVGSLQPSQLRLALHGGLTLRKANASNRNPMNSYLFLTHLKASMEDVQQTYIMIKPDGVQRGLVGEIIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain