SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20177

Length: 246 nt

UniGene Fasta

>biog3_v1.0_unigene20177
AATGTTGATGGCAGCGCCCATCTGCTGCAACTACTATTCTATAGGCCCATCTGCTTCTGCATCCTCGTCCACATGTGCTCCCATTGCTCCAAGCTTTCATGTACTGCCCAATGACTCGAACAAGAGATTACCCAAATGGAAATGCAGGTTATTGGATTTGCTCAGCAGACGAGGTCCAGGCAAATGTACTTCCACTTCTGGGGCTCATGGCATCTCTATTAGGTGCTCCAGAGCTTCAGCAGAAGA

Ace file of the UniGene biog3_v1.0_unigene20177

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20493	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Peptidyl-prolyl cis-trans isomerase, chloroplastic; AltName: Full=40 kDa thylakoid lumen PPIase; AltName: Full=40 kDa thylakoid lumen rotamase; Flags: Precursor emb\|CAA72792.1\| thylakoid lumen rotamase [Spinacia oleracea]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	peptidyl-prolyl cis-trans isomerase chloroplastic-like	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	82%
Blast2go	catalytic activity	GO:0003824	Molecular Function	82%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLE8

Fln msg: Distance to subject end: 389 aas, your sequence is shorter than subject: 81 - 469

Fln protein: MLMAAPICCNYYSIGPSASASSSTCAPIAPSFHVLPNDSNKRLPKWKCRLLDLLSRRGPGKCTSTSGAHGISIRCSRASAE

Protein Length: 82

Fln nts: A_-_ATGTTGATGGCAGCGCCCATCTGCTGCAACTACTATTCTATAGGCCCATCTGCTTCTGCATCCTCGTCCACATGTGCTCCCATTGCTCCAAGCTTTCATGTACTGCCCAATGACTCGAACAAGAGATTACCCAAATGGAAATGCAGGTTATTGGATTTGCTCAGCAGACGAGGTCCAGGCAAATGTACTTCCACTTCTGGGGCTCATGGCATCTCTATTAGGTGCTCCAGAGCTTCAGCAGAAGA

Fln Alignment:

biogeco3_mira_c17810___MAAPICCNYYXXXXXXXXXXXXXXXXXXXFHVLPNDSNKRLPKWKCRLLDLLSRRGPGKCTSTSGAHGISIRCSRASAE
B8LLE8__________________MAAPVCCNYYSICPSAAPSASTCAPITPSLHVLSNDTNKRLPKWKCRLLDLMGRRGPGKCTSTPGAHGISIRCSRASAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain