SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20171

Length: 243 nt

UniGene Fasta

>biog3_v1.0_unigene20171
AATGTGGGAGTAATTTTGAATAATTTGTCTGCTATGCGAAGTCTATGCCCCAATCTGGCCAGGACACGATATTCCCACCACTGTATCGAACCTTTGAAATCTTACTCTCAATCTCCTACCTGCATCAATTACAATATCAAGCAGGGGGATTCCAGTGTTCGAATCCTTGATCGAAGACAGAGATTTTCAAATTCTTCTCTTGTTCGTGGTATTGTTATAATTTGCAGCATGGAATCCAGTAGC

Ace file of the UniGene biog3_v1.0_unigene20171

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13762	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate mutase-like protein [Arabidopsis thaliana] emb\|CAB81831.1\| putative protein [Arabidopsis thaliana] gb\|ABD91496.1\| At3g60450 [Arabidopsis thaliana] gb\|AEE80063.1\| phosphoglycerate mutase-like protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	phosphoglycerate mutase-like protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	0.0	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPK4

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 70 - 317

Fln protein: MRSLCPNLARTRYSHHCIEPLKSYSQSPTCINYNIKQGDSSVRILDRRQRFSNSSLVRGIVIICSMESSS

Protein Length: 71

Fln nts: AATGTGGGAGTAATTTTGAATAATTTGTCTGCT_-_ATGCGAAGTCTATGCCCCAATCTGGCCAGGACACGATATTCCCACCACTGTATCGAACCTTTGAAATCTTACTCTCAATCTCCTACCTGCATCAATTACAATATCAAGCAGGGGGATTCCAGTGTTCGAATCCTTGATCGAAGACAGAGATTTTCAAATTCTTCTCTTGTTCGTGGTATTGTTATAATTTGCAGCATGGAATCCAGTAGC

Fln Alignment:

biogeco3_mira_c17803___MRSLCPNLARTRYSHHCIEPLKSYSQSPTCINYNIKQGDSSVRILDRRQRFSNSSLVRGIVIICSMESSS
A9NPK4__________________MRSVFPNLARTRYSHLWIEPLKSHSHSNTCNKYYIKRRESRVRILEQGYNFSKFSLIRGIVVIRSMESSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain