SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20135

Length: 516 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20135
CAGGCGCGCATTGGCCGAGTTGCAGGGAACAAGGATCTCTACCTGGGAACTTTCAGTACCCAGGAAGAAGCGGCGGAAGCCTACGACATCGCCGCCATCAAGTTCAGGGGCACAAATGCTGTCACAAATTTTGATATCAGTAGATATGACGTGAAACGTATCTTGGCAAGCAACACCTTGCTGGTCGGCGAGATGGCCAGACTCAACAAGGATCAGCTGGCGGAGCCATTAACAGCGGAGCCACCGGATCAGCCCGAGGTTCCTATCGTAATTCATCAAATTGCCACGAAAAATACAGCGCCAAGGAAACCGATTATGAAGACAAGGACACCAAGAACAACAACAACTGGCAAATGCAGGTGCAGGTGAGCGATGGCGATCAGAACGGTCACATTAATTCTTGTTCCAATGAGCCTTCCGACCATGGCAAAATCTGGGATGATGACCAGAAGCCCAACCAGTGCTTCACTGAATCTCAACACCTGGCAGCTCTTCATAACCTAATGGGACTACATT

Ace file of the UniGene biog3_v1.0_unigene20135 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27680	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH	-	-	46%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	64%
Blast2go	ap2 domain-containing transcription factor	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 146 aas, your sequence is shorter than subject: 123 - 606

Fln protein: QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTNAVTNFDISRYDVKRILASNTLLVGEMARLNKDQLAEPLTAEPPDQPEVPIVIHQIATKNTAPRKPIMKTRTPRTTTTGKCRCR*

Protein Length: 124

Fln nts: CAGGCGCGCATTGGCCGAGTTGCAGGGAACAAGGATCTCTACCTGGGAACTTTCAGTACCCAGGAAGAAGCGGCGGAAGCCTACGACATCGCCGCCATCAAGTTCAGGGGCACAAATGCTGTCACAAATTTTGATATCAGTAGATATGACGTGAAACGTATCTTGGCAAGCAACACCTTGCTGGTCGGCGAGATGGCCAGACTCAACAAGGATCAGCTGGCGGAGCCATTAACAGCGGAGCCACCGGATCAGCCCGAGGTTCCTATCGTAATTCATCAAATTGCCACGAAAAATACAGCGCCAAGGAAACCGATTATGAAGACAAGGACACCAAGAACAACAACAACTGGCAAATGCAGGTGCAGGTGAGCGATGGCGATCAGAACGGTCACATTAATTCTTGTTCCAATGAGCCTTCCGACCATGGCAAAATCTGGGATGATGACCAGAAGCCCAACCAGTGCTTCACTGAATCTCAACACCTGGCAGCTCTTCATAACCTAATGGGACTACATT

Fln Alignment:

biogeco3_mira_c17756___QARIGRVAGNKDLYLGTFSTQXXXXXAYDIAAIKFRGTNAVTNFDISRYDVKRILASNTLLVGEMARLNK--DQLAEPLTAEPPDQPEVPIVIHQIATKNT
Q76H96__________________QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEP-SGDSPLQIEAAAPLQIEAAHNS

SSRs (tot: 1)

Start position	End position	Sequence	Length
170	181	GTT GTT GTT GTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain