SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20120

Length: 239 nt

UniGene Fasta

>biog3_v1.0_unigene20120
AATGTACTTGTAACGATGTACGCAAAATGTGGTCGCATGGACGGTGCAGCGCATTTATTTGACAGAATGCCTCAGAGAGATGTGGTCTCCTGGAATGGGATGATTGGAGGCTATGTTGAAAACGGGCACTATGATAGGGGCTTGAAATTCTTTCATGAAATGCAGCTAGCAGGTGTGAAACCAGACTCAATCACAATTGCGAGTGTTCTACCCTTATGTGGCCAGTTGGTAGCTTTGCA

Ace file of the UniGene biog3_v1.0_unigene20120

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene38665	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LN01.1\|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070 gb\|AAF79838.1\|AC026875_18 T6D22.15 [Arabidopsis thaliana] gb\|AEE28239.1\| pentatricopeptide repea	-	-	5.0e-29	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	pentatricopeptide repeat-containing	-	-	5.14557e-42	69%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	PDZ-binding protein, CRIPT	IPR019367	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 254 aas, your sequence is shorter than subject: 79 - 795

Fln protein: NVLVTMYAKCGRMDGAAHLFDRMPQRDVVSWNGMIGGYVENGHYDRGLKFFHEMQLAGVKPDSITIASVLPLCGQLVAL

Protein Length: 80

Fln nts: AATGTACTTGTAACGATGTACGCAAAATGTGGTCGCATGGACGGTGCAGCGCATTTATTTGACAGAATGCCTCAGAGAGATGTGGTCTCCTGGAATGGGATGATTGGAGGCTATGTTGAAAACGGGCACTATGATAGGGGCTTGAAATTCTTTCATGAAATGCAGCTAGCAGGTGTGAAACCAGACTCAATCACAATTGCGAGTGTTCTACCCTTATGTGGCCAGTTGGTAGCTTTGCA

Fln Alignment:

biogeco3_mira_c17736___NVLVTMYAKCGRMDGAAHLFDRMPQRDVVSWNGMIGGYVENGHYDRGLKFFHEMQLAGVKPDSITIASVLPLCGQLVAL
B8LQA8__________________NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFAL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain