SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20100

Length: 406 nt

UniGene Fasta

>biog3_v1.0_unigene20100
AATGTTGAAAATGGGTCTCCAAGTTTGAATGAGGTCTCCCCAACACATGAGTCATGTGTTTCTTGCAGGATCAGTAAGTAACTCTGGGGATGGACTAAATGACCGAGGAAGAAATAGGCGCAGTGAGAACAGTGCAAATCAAATAGATAACAAGAAGCAATATCAACTTGACTTGGAGAAGCTAATGCGTGGCGAAGATTCTCGTACGACACTCATGATAAAAAACATTCCGAACAAGTATAAACTTACAAAGATGCTATTAGCAGCTATTGATGAAAATCATCGTGGGAGTTATGATTTCCTCTACTTGCCTATTGATTTTAAGAATAAATGCAATGTTGGTTATGCTTTTATAAATATGATTTCTCCAGCTCATATCATTCCTTTCTACCAGGCATTCAACGGA

Ace file of the UniGene biog3_v1.0_unigene20100

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13816	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein MEI2, putative; 36123-32976 [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein mei2-like 2-like	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKG9

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 135 - 892

Fln protein: MLKMGLQV*MRSPQHMSHVFLAGSVSNSGDGLNDRGRNRRSENSANQIDNKKQYQLDLEKLMRGEDSRTTLMIKNIPNKYKLTKMLLAAIDENHRGSYDFLYLPIDFKNKCNVGYAFINMISPAHIIPFYQAFNG

Protein Length: 136

Fln nts: AATGTTGAAAATGGGTCTCCAAGTTTGAATGAGGTCTCCCCAACACATGAGTCATGTGTTTCTTGCAGGATCAGTAAGTAACTCTGGGGATGGACTAAATGACCGAGGAAGAAATAGGCGCAGTGAGAACAGTGCAAATCAAATAGATAACAAGAAGCAATATCAACTTGACTTGGAGAAGCTAATGCGTGGCGAAGATTCTCGTACGACACTCATGATAAAAAACATTCCGAACAAGTATAAACTTACAAAGATGCTATTAGCAGCTATTGATGAAAATCATCGTGGGAGTTATGATTTCCTCTACTTGCCTATTGATTTTAAGAATAAATGCAATGTTGGTTATGCTTTTATAAATATGATTTCTCCAGCTCATATCATTCCTTTCTACCAGGCATTCAACGGA

Fln Alignment:

biogeco3_mira_c17702___LKMGLQV*MRSPQHMSHVF----LAGSVSXXXXXXXXXXXXXXXENSANQIDNKKQYQLDLEKLMRGEDSRTTLMIKNIPNKYKLTKMLLAAIDENHRGSYDFLYLPIDFKNKCNVGYAFINMISPAHIIPFYQAFNG
B8LKG9__________________IECGSPIGVLSPQRKSRMFSSGGFTGSIANFSEGLNERGRSRRGDNSTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYT-SKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQAFNG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
174	33	66			0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain