SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene20023

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene20023
CTCAGGCTTTCCAGTCCCCTCAATACCTTCCCAATAATTTGAAACCTAAAACATTGCAAACCCCAAGATGGCGTAGAGTGCTTCTGAAAATAAGTGGGACTGCTTTAGCAGGGAATGCACAAAATGTCGACCCTAAGGTGACATCATCAATAGCCAGAGAAATCGCAGCAGTTAATCGCCTTGGTGTAGAGGTTGCAGTTGTTGTAGGAGGGCGGAACTTCTTTTGTGGAGCTTCATGGGTGCAATCTACAGGTCTGGATAGAGCTTCTGCAGATCAGATAGGGTGATGATGATGGCAACTGTCATGAATTCCATTATTCTTCAGGCTGACATGGAGAATTTGGGCATTCAAACTCGTGTTCAGACCGCTTTCAAAATGTCAGAGATTGCAGAGCCATACATTCGACGACGTGCAATCCGTCATCTTGAGAAAGGGAGACATT

Ace file of the UniGene biog3_v1.0_unigene20023 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10353	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	uridylate kinase [Arabidopsis thaliana] dbj\|BAB01794.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK92763.1\| putative uridylate kinase [Arabidopsis thaliana] gb\|AAM14100.1\| putative uridylate kinase [Arabidopsis thaliana] gb\|AEE76131.1\| uridylate	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	65%
Blast2go	uridylate kinase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	UMP kinase.	EC:2.7.4.22	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	83%
Blast2go	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	83%
Blast2go	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	83%
Blast2go	phosphorylation	GO:0016310	Biological Process	83%
Blast2go	mRNA processing	GO:0006397	Biological Process	83%
Blast2go	RNA binding	GO:0003723	Molecular Function	83%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	83%
Blast2go	UMP kinase activity	GO:0033862	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Uridylate kinase	IPR011817	-	-
Sma3	Uridylate kinase, bacteria	IPR015963	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I5U8

Fln msg: Overlapping hits, possible frame ERROR between 284 and 281, Distance to subject end: 116 aas, your sequence is shorter than subject: 147 - 504

Fln protein: QAFQSPQYLPNNLKPKTLQTPRWRRVLLKISGTALAGNAQNVDPKVTSSIAREIAAVNRLGVEVAVVVGGRNFFCGASWVQSTGLDRASADQxxxMMMATVMNSIILQADMENLGIQTRVQTAFKMSEIAEPYIRRRAIRHLEKGRH

Protein Length: 148

Fln nts: CTCAGGCTTTCCAGTCCCCTCAATACCTTCCCAATAATTTGAAACCTAAAACATTGCAAACCCCAAGATGGCGTAGAGTGCTTCTGAAAATAAGTGGGACTGCTTTAGCAGGGAATGCACAAAATGTCGACCCTAAGGTGACATCATCAATAGCCAGAGAAATCGCAGCAGTTAATCGCCTTGGTGTAGAGGTTGCAGTTGTTGTAGGAGGGCGGAACTTCTTTTGTGGAGCTTCATGGGTGCAATCTACAGGTCTGGATAGAGCTTCTGCAGATCAGxxxxxxxxxATGATGATGGCAACTGTCATGAATTCCATTATTCTTCAGGCTGACATGGAGAATTTGGGCATTCAAACTCGTGTTCAGACCGCTTTCAAAATGTCAGAGATTGCAGAGCCATACATTCGACGACGTGCAATCCGTCATCTTGAGAAAGGGAGACATT

Fln Alignment:

biogeco3_mira_c17591___QSPQYLP------NNLKPKTLQTPRWRRVLLKISGTALAGNAQNVDPKVTSSIAREIAAVNRLGVEVAVVVGGRNFFCGASWVQSTGLDRASADxxxMMATVMNSIILQADMENLGIQTRVQTAFKMSEIAEPYIRRRAIRHLEKGR
F6I5U8__________________QSKRYAPSTVTFANNMKPKTLSNPKWRRVVFKISGAALAGNCQNIDPKVAMQIAREVTTACRLGVEVAIVVGGRNFFCGDSWVSATGLDRPTAYxxxMMATVMNSILLQSALEKLGVQTRVQSAFPTPEVAEPYSRQRAIRHLEKGR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain